MmuEX0001355 @ mm10
Exon Skipping
Gene
ENSMUSG00000043183 | Simc1
Description
SUMO-interacting motifs containing 1 [Source:MGI Symbol;Acc:MGI:2442599]
Coordinates
chr13:54503779-54526672:+
Coord C1 exon
chr13:54503779-54504004
Coord A exon
chr13:54512320-54512472
Coord C2 exon
chr13:54523970-54526672
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCTCTGAGCTACCAGGCT
3' ss Score
0.89
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCGACGCCTTCGCTGCAGTCGCTTCAGCAGCTGGAACCGGAGTCGGAGTCGCCGGGGCCGCTCGCCGCTCGCGCGTGGCTCCGCCGGGCCCGTAGCCATGGAGGACTTTATCGTGATCTCCGACGACAGTGGCTCCGAGAGCTCGGCCGGGACCCGCTCGGGCAGGGCGCGGAGGCTGCGCCGGGCCCTGTCTCGGACCCCCGGCGCGCTGCCCCGCCGAACCGTG
Seq A exon
GCTTTCACCCCAGCATCTGGCTCCTGAGTCTTCATTGGGAAAATCAAATGATTGAGCTTTTGTTAAAAACATTTGGCACTCCAATGCGTGGCACGACCATAAGGACAAAGAAATCACATCAGCCGTGGACAAACTGAGAAGCCATCAGATTTG
Seq C2 exon
GACTTCATTGACTTAACTAGAGAAAACCGAGCAAGGACAAAAGACCGGAATGGACTCTGTGTGATTGATCTAACAAGAAATGAGGAAGAAAATAGGCCTATTGCCACTCTTGATTTGACTTTAGAACCTGTAGCTTCCTCTCAGAAGGAGCCAACCAGTCTTCAGACATGTACCAGTCTCTCGGGCAAAGAAGTGATGGAAGCCCATGAAGATAGAGGCTCTCAGCCTGCAGCACAGAGAATCATTAACAATGATCCTGTAGATTTGGATTTGCTAGAGGAAAACCTGTTTGAAGGTTCTCGACCCCCTACATCTATCAGCCAGGACTCTGTTTATCCACCAGAACCAAACTGTAGCTCAATCACATATAAAGGTGACCTCAGCTTCTTGACAAGCCTACAGCTCTCTTCAGATGTTAGCTCCTTCTCCTCCACAAGCAATCAGAGGGCCTCTTTGCCATGCCCACAGCAAGATGTGCCTTGTCAATCACAAGGCTTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043183-'0-7,'0-6,1-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=0.750 A=1.000 C2=0.808
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000121401fB118
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGCAGCTGGAACCGG
R:
GGTCTTTTGTCCTTGCTCGGT
Band lengths:
251-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types