MmuEX0001355 @ mm9
Exon Skipping
Gene
ENSMUSG00000043183 | 4732471D19Rik
Description
RIKEN cDNA 4732471D19 gene [Source:MGI Symbol;Acc:MGI:2442599]
Coordinates
chr13:54605140-54628033:+
Coord C1 exon
chr13:54605140-54605365
Coord A exon
chr13:54613681-54613833
Coord C2 exon
chr13:54625331-54628033
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCTCTGAGCTACCAGGCT
3' ss Score
0.89
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCGACGCCTTCGCTGCAGTCGCTTCAGCAGCTGGAACCGGAGTCGGAGTCGCCGGGGCCGCTCGCCGCTCGCGCGTGGCTCCGCCGGGCCCGTAGCCATGGAGGACTTTATCGTGATCTCCGACGACAGTGGCTCCGAGAGCTCGGCCGGGACCCGCTCGGGCAGGGCGCGGAGGCTGCGCCGGGCCCTGTCTCGGACCCCCGGCGCGCTGCCCCGCCGAACCGTG
Seq A exon
GCTTTCACCCCAGCATCTGGCTCCTGAGTCTTCATTGGGAAAATCAAATGATTGAGCTTTTGTTAAAAACATTTGGCACTCCAATGCGTGGCACGACCATAAGGACAAAGAAATCACATCAGCCGTGGACAAACTGAGAAGCCATCAGATTTG
Seq C2 exon
GACTTCATTGACTTAACTAGAGAAAACCGAGCAAGGACAAAAGACCGGAATGGACTCTGTGTGATTGATCTAACAAGAAATGAGGAAGAAAATAGGCCTATTGCCACTCTTGATTTGACTTTAGAACCTGTAGCTTCCTCTCAGAAGGAGCCAACCAGTCTTCAGACATGTACCAGTCTCTCGGGCAAAGAAGTGATGGAAGCCCATGAAGATAGAGGCTCTCAGCCTGCAGCACAGAGAATCATTAACAATGATCCTGTAGATTTGGATTTGCTAGAGGAAAACCTGTTTGAAGGTTCTCGACCCCCTACATCTATCAGCCAGGACTCTGTTTATCCACCAGAACCAAACTGTAGCTCAATCACATATAAAGGTGACCTCAGCTTCTTGACAAGCCTACAGCTCTCTTCAGATGTTAGCTCCTTCTCCTCCACAAGCAATCAGAGGGCCTCTTTGCCATGCCCACAGCAAGATGTGCCTTGTCAATCACAAGGCTTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043183-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=0.795 A=1.000 C2=0.820
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGCAGCTGGAACCGG
R:
GGTCTTTTGTCCTTGCTCGGT
Band lengths:
251-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types