MmuEX0001357 @ mm9
Exon Skipping
Gene
ENSMUSG00000043183 | 4732471D19Rik
Description
RIKEN cDNA 4732471D19 gene [Source:MGI Symbol;Acc:MGI:2442599]
Coordinates
chr13:54605140-54638597:+
Coord C1 exon
chr13:54605140-54605365
Coord A exon
chr13:54630515-54630584
Coord C2 exon
chr13:54638443-54638597
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGATGTCACTTGACTTTCAGGCT
3' ss Score
6.84
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GCGACGCCTTCGCTGCAGTCGCTTCAGCAGCTGGAACCGGAGTCGGAGTCGCCGGGGCCGCTCGCCGCTCGCGCGTGGCTCCGCCGGGCCCGTAGCCATGGAGGACTTTATCGTGATCTCCGACGACAGTGGCTCCGAGAGCTCGGCCGGGACCCGCTCGGGCAGGGCGCGGAGGCTGCGCCGGGCCCTGTCTCGGACCCCCGGCGCGCTGCCCCGCCGAACCGTG
Seq A exon
GCTGCATCCAGCCAATGCCAAGACAGTGGAGTGGGACTGGAAACTGCTCACCTATGTCATGGAGGAAGAG
Seq C2 exon
GGACAAACTCTGCCTGGACGAGTTCTCTTTCTACGCTACGTAGTGCAAACCCTGGAAGATGACTTCCAGCAGATCTTGAGGAGACAGCGGCAGCACCTACAGCAATCCATTGCAAACACTGTTCTGTCATGTGACAAACAGCCTCACAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043183_MULTIEX1-4/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.795 A=0.142 C2=0.096
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF154511=DUF4632=PD(32.1=34.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTGATCTCCGACGACAGT
R:
CCAGGGTTTGCACTACGTAGC
Band lengths:
172-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: