DreEX6059329 @ danRer10
Exon Skipping
Gene
ENSDARG00000098209 | SIMC1
Description
SUMO-interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr14:49788104-49792088:-
Coord C1 exon
chr14:49791835-49792088
Coord A exon
chr14:49788347-49788416
Coord C2 exon
chr14:49788104-49788267
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTGTGTGTTTAAAGATA
3' ss Score
8.75
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CATGAGGATGAGGATGAAAATGAACACTATGGTCCGGCGGAGCCTCTGTGTCGTCAGAGCCTCAGTCTGGTCTACAGCACTATAGAGGAGAATTACCCAGAAGGCACTCTTCAGCTGCTCTCCGACTTCATCCAGCCGCGTTATTACCCACCGCTGGACATCACCACACATCTGCTTAGAGGAGTTTTTCTGGACCCGCAAACCACTGATGTGCTCACCGTAGAGGCCTTTAACTTACTGATGAAGACTCAGAG
Seq A exon
ATACCACCCTGTGGATGCTTCTACAGTGCCTTGGGATTGGGAACTGATTAAATCCGTTATGAAAGATCAG
Seq C2 exon
GATGACACGTGGAGGCTGCGAACGGAGGTTCAGGTCATGCTTCTGCAGTATGTGCTGCAGGGTTTAGAAGATGACTTTCATCTGAAGCTCAGCACTCAGTGTCTTCAACACTCTCTAGCCAAGAAGGTGCTTTCATGTGGCCCTGAAACATTTGGGCAGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098209-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCATCCAGCCGCGTTAT
R:
GAAGCATGACCTGAACCTCCG
Band lengths:
174-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]