RnoEX6053146 @ rn6
Exon Skipping
Gene
ENSRNOG00000016932 | Simc1
Description
SUMO-interacting motifs containing 1 [Source:RGD Symbol;Acc:2319689]
Coordinates
chr17:10610929-10618503:-
Coord C1 exon
chr17:10618271-10618503
Coord A exon
chr17:10617594-10617663
Coord C2 exon
chr17:10610929-10611083
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGATGTCACTTGACTTTCAGGCT
3' ss Score
6.84
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
AGCAAGGGTCAGAAATTAGAACCCATCCCTCATCGAAGACTAAGAATGGTGACAAACACTATTGAGGAAAACTTCCCCTTGGGAACTGTGCAGTTTTTAATGGACTTTGTTTCACCCCAACATTACCCACCCAGAGAAATTGTGGCTCACATCATCCAGAAAATCCTGCTGAGCGGCTCTGAGACTGTGGATGTCCTCAAGGAGGCCTACATGCTTCTCATGAAAATCCAACA
Seq A exon
GCTGCATCCAGCCAATGCCAAGACAGTGGAGTGGGACTGGAAACTGCTCACCTATGTCATGGAGGAAGAG
Seq C2 exon
GGGCAAACTTTACCTGGACGAGTTCTCTTTCTACGGTACGTGGTGCAGACCCTGGAGGATGACTTCCAGCAGATCCTGAGGAGACAGCGGCAGCACCTACAGCAATCCATTGCAAACACGGTTCTGTCATGTGACAAACAGCCCCACAACGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016932-'7-12,'7-10,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGCCTACATGCTTCTCA
R:
TGGGGCTGTTTGTCACATGAC
Band lengths:
180-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]