BtaEX6050718 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000034998 | SIMC1
Description
SUMO-interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr10:5000544-5006118:-
Coord C1 exon
chr10:5005886-5006118
Coord A exon
chr10:5005033-5005102
Coord C2 exon
chr10:5000544-5000698
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGCTATCACTTGACTTTCAGGCT
3' ss Score
7.22
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
AACAAGGGTCAAAAATTAGAACCTATCCCTCATCGAAGATTAAGGATGGTAACAAACACCATTGAAGAAAATTTCCCCTTGGGGACTGTGCAGTTTTTGATGGACTTTGTGTCACCCCAGCATTACCCGCCCCGAGAAATTGTGGCTCACATCATCCAGAAAATCCTGCTCAGTGGCTCTGAGACTTTGGATGTTCTAAAGGAGGCCTACATGCTTCTCATGAAAATTCAACA
Seq A exon
GCTACATCCAGCTAATGCCAAGACAGTGGAGTGGGACTGGAAGCTTCTCGCTTATGTCATGGAGGAAGAG
Seq C2 exon
GGACAAAACCTGCCCGGGCGAGTCTTCTTTCTGCGTTATGTAGTACAGACCCTGGAAGACGATTTCCAGCAGATCCTGAGGAAGCAGCGACAGCACCTGCAGCAAGCCATCGCAAGCACTGTGCTGTCCTGTGACAAGCAACCCCACAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034998-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTTGTGTCACCCCAGCAT
R:
AACGCAGAAAGAAGACTCGCC
Band lengths:
168-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]