BtaEX6050717 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000034998 | SIMC1
Description
SUMO-interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr10:5005033-5010171:-
Coord C1 exon
chr10:5009666-5010171
Coord A exon
chr10:5005886-5006118
Coord C2 exon
chr10:5005033-5005102
Length
233 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTATCTCTACAGAAC
3' ss Score
11.91
5' ss Seq
ACAGTATGA
5' ss Score
2.27
Exon sequences
Seq C1 exon
TGCCGCCGTCACCAGGAGATGCGCCGCCGTCACCAGCAAGTGTACCGCATTCATCTAGAGAAGTCTCATGCTTATCAGGAGATGCCCTTCGTTCACCTGGGGACATGTCACGCTCATTGGTAGACATGCCACCCACAGTTGGACAGTTGGCTCATTTACCAAAAATCAGGCCTGCCTCTCCCCAGAATGACATACAGAACCATGACACCCCTATGGATGTCTCGGCTCCATCCTCTCCAAGCTCCTCTCCCAGCCCACAGTCCCCAGAGTTTGAGACTTCCTTAGAGAAAGTTCCTTGGCTCTCTGTCACAGAAAATCCAGCCAGAAAAGAGAGATCACTGTCAGAGCCTGTCAACCCCGGGTGTGCCCTGATACAGACACAGATACCGCAAGGCGGGTTGTACAACAGACCGTGCCTACATAGACTGAAGTACTTCTTACGACCTCCGGTGCATCACCTCTTCTTCCAGACACTAATACCAGATAAAGACACAAGAGAG
Seq A exon
AACAAGGGTCAAAAATTAGAACCTATCCCTCATCGAAGATTAAGGATGGTAACAAACACCATTGAAGAAAATTTCCCCTTGGGGACTGTGCAGTTTTTGATGGACTTTGTGTCACCCCAGCATTACCCGCCCCGAGAAATTGTGGCTCACATCATCCAGAAAATCCTGCTCAGTGGCTCTGAGACTTTGGATGTTCTAAAGGAGGCCTACATGCTTCTCATGAAAATTCAACA
Seq C2 exon
GCTACATCCAGCTAATGCCAAGACAGTGGAGTGGGACTGGAAGCTTCTCGCTTATGTCATGGAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034998-'3-7,'3-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.763 A=0.128 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCAAGCTCCTCTCCCAG
R:
AGTCCCACTCCACTGTCTTGG
Band lengths:
306-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]