DreEX6059328 @ danRer10
Exon Skipping
Gene
ENSDARG00000098209 | SIMC1
Description
SUMO-interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr14:49788347-49794265:-
Coord C1 exon
chr14:49793255-49794265
Coord A exon
chr14:49791835-49792088
Coord C2 exon
chr14:49788347-49788416
Length
254 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTTGTTTTGAATAGCAT
3' ss Score
8.35
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTGAATATAATCATCATCACTTTAAAACACACAACAGTCAGGAGTCACCACAAAATGCTGAGCTTTCTTCGGAGAACGTGTCAATTTGCAATGCACTTTTATTAAAGGAGGACAAAGAGACGATGGATGTTACTGAAAATTGTCAGGTTCATCCTAAATGTTCTTTAAATACCTCATTCTTTCCTTGCTGGAGCCCTGAGCAAACGCCCAGACAGAGTAAACCCAACAGTCCCACCTCCACAGAGATTTTAGCCAGCGATACAGCGGCGCTTTCGCCAGATTTTTCCACGCCGAGTTCACCCAACAGCTCTTTTAGTCTCCTGAACTCACAGCCCGGATCACCAGAAAACTGTCCTGTCAGGGTTTGGGAGACGAGGAGTGACTGTGAAGATAATGCGGTGTCGGATTATGATGGAAAAAGTGCACAAGAGACGCAACGCATCTGTCTGGCTCAGTACAGAAAATTGAGTCGGTGCTTTGGTGGGACGGTGCTGCAGACA
Seq A exon
CATGAGGATGAGGATGAAAATGAACACTATGGTCCGGCGGAGCCTCTGTGTCGTCAGAGCCTCAGTCTGGTCTACAGCACTATAGAGGAGAATTACCCAGAAGGCACTCTTCAGCTGCTCTCCGACTTCATCCAGCCGCGTTATTACCCACCGCTGGACATCACCACACATCTGCTTAGAGGAGTTTTTCTGGACCCGCAAACCACTGATGTGCTCACCGTAGAGGCCTTTAACTTACTGATGAAGACTCAGAG
Seq C2 exon
ATACCACCCTGTGGATGCTTCTACAGTGCCTTGGGATTGGGAACTGATTAAATCCGTTATGAAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098209-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.561 A=0.153 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTAGCCAGCGATACAGCGG
R:
TCCCAATCCCAAGGCACTGTA
Band lengths:
296-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]