RnoEX0080941 @ rn6
Exon Skipping
Gene
ENSRNOG00000016932 | Simc1
Description
SUMO-interacting motifs containing 1 [Source:RGD Symbol;Acc:2319689]
Coordinates
chr17:10617594-10623266:-
Coord C1 exon
chr17:10621456-10623266
Coord A exon
chr17:10618271-10618503
Coord C2 exon
chr17:10617594-10617663
Length
233 bp
Sequences
Splice sites
3' ss Seq
CTATCTCTTTGTCTCTACAGAGC
3' ss Score
10.56
5' ss Seq
ACAGTATGA
5' ss Score
2.27
Exon sequences
Seq C1 exon
TGTCACCAGCATCAGGAGATGCGATGCAGTCACCAGGAGGTGTGTCACCATCATTAGGAGATGTGCCACAGTCACCTGGCAATATGTTAGAGTCACTTGGAAATACACCAAACTTATCAGGAGATGTGTCACACGTACCACAAGAGTTATTGGATTTGGCAAAAGGCAGGCCCAAATTGTCCCTGAATGCTGTGCAAAATCGCCATTCTCCTATGACTATCTCGGCTCCATCCTCTCCAAGCTGCTCTGCTAACCCACTGTCTCAACAGTCTGAATTTTCCTCAGAAAAACGTCCTTGGCTCACAGTCTCAAACAGCTCAGCCAGAGAAGAGAGATCACTGCCACAGTCTGCCACCCCTGGCTCTGCCCAGATACAGGGACAAATAGCACAAGCTGGGGTGTACAATAGGCCTTGCCTGCATAGACTGAAGTACTTCCTACGGCCTCCAGTACATCATCTCTTCTTCCAGACGTTAATACCGGATAAAGACACACGAGAG
Seq A exon
AGCAAGGGTCAGAAATTAGAACCCATCCCTCATCGAAGACTAAGAATGGTGACAAACACTATTGAGGAAAACTTCCCCTTGGGAACTGTGCAGTTTTTAATGGACTTTGTTTCACCCCAACATTACCCACCCAGAGAAATTGTGGCTCACATCATCCAGAAAATCCTGCTGAGCGGCTCTGAGACTGTGGATGTCCTCAAGGAGGCCTACATGCTTCTCATGAAAATCCAACA
Seq C2 exon
GCTGCATCCAGCCAATGCCAAGACAGTGGAGTGGGACTGGAAACTGCTCACCTATGTCATGGAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016932-'6-10,'6-9,7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=0.140 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAGCTGCTCTGCTAACC
R:
CTGTCTTGGCATTGGCTGGAT
Band lengths:
292-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]