GgaEX1052563 @ galGal4
Exon Skipping
Gene
ENSGALG00000003377 | SIMC1
Description
SUMO-interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr13:9756135-9757163:-
Coord C1 exon
chr13:9757063-9757163
Coord A exon
chr13:9756609-9756829
Coord C2 exon
chr13:9756135-9756204
Length
221 bp
Sequences
Splice sites
3' ss Seq
CTGCCTTACCTTGCACACAGCGG
3' ss Score
7.52
5' ss Seq
AATGTACGT
5' ss Score
6.58
Exon sequences
Seq C1 exon
CTGACAGCATGGTCTGGCTAAACAAACTGCGCTATTTCAGGAGGAGTGGAGTCCAGCACCTCTTCTTTCATGGTGCAACATCTGACAGGGAAACACCACAG
Seq A exon
CGGAAACCCGAGCTCATCCCCAGCAGTAAGATGAGCATGGTACGCACCACCATGGAGGAGAACTTCCTGGAGGGAACCTTGCATTTCCTCAGTGACTTCATCTCCCGCCAGCACTGCCCTCCCAAAGAAATCGTCTCCCATCTGATCAGACACATCCTGTTGAACTCCCACCAGGAGGAGATCCTCCAGAACACCTACACGCTGCTGATGAAGATCCAAAT
Seq C2 exon
GCTCCATCCAGCCAACACGACCACAGTAGGATGGGACTGGATGCTGCTGAAATACACCATGGAGAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003377-'1-1,'1-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.135 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACAGCATGGTCTGGCTAA
R:
CGTTCTCCATGGTGTATTTCAGC
Band lengths:
169-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]