GgaEX1052563 @ galGal3
Exon Skipping
Gene
ENSGALG00000003377 | C5orf25
Description
NA
Coordinates
chr13:10500957-10502081:-
Coord C1 exon
chr13:10501885-10502081
Coord A exon
chr13:10501431-10501651
Coord C2 exon
chr13:10500957-10501026
Length
221 bp
Sequences
Splice sites
3' ss Seq
CTGCCTTACCTTGCACACAGCGG
3' ss Score
7.52
5' ss Seq
AATGTACGT
5' ss Score
6.58
Exon sequences
Seq C1 exon
GCATCACTAAGAGGTCAGGGAAGGCCAAAAGGACTTCTTTGGAAGCAGGTGGCTCACAAGAAGCAATCCGACAAGTGACCTCAGCCAGTACTAAGGCTGACAGCATGGTCTGGCTAAACAAACTGCGCTATTTCAGGAGGAGTGGAGTCCAGCACCTCTTCTTTCATGGTGCAACATCTGACAGGGAAACACCACAG
Seq A exon
CGGAAACCCGAGCTCATCCCCAGCAGTAAGATGAGCATGGTACGCACCACCATGGAGGAGAACTTCCTGGAGGGAACCTTGCATTTCCTCAGTGACTTCATCTCCCGCCAGCACTGCCCTCCCAAAGAAATCGTCTCCCATCTGATCAGACACATCCTGTTGAACTCCCACCAGGAGGAGATCCTCCAGAACACCTACACGCTGCTGATGAAGATCCAAAT
Seq C2 exon
GCTCCATCCAGCCAACACGACCACAGTAGGATGGGACTGGATGCTGCTGAAATACACCATGGAGAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003377-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.149 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAGAGGTCAGGGAAGGCC
R:
CGTTCTCCATGGTGTATTTCAGC
Band lengths:
260-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]