MmuEX0001356 @ mm10
Exon Skipping
Gene
ENSMUSG00000043183 | Simc1
Description
SUMO-interacting motifs containing 1 [Source:MGI Symbol;Acc:MGI:2442599]
Coordinates
chr13:54523970-54529223:+
Coord C1 exon
chr13:54523970-54526672
Coord A exon
chr13:54528304-54528536
Coord C2 exon
chr13:54529154-54529223
Length
233 bp
Sequences
Splice sites
3' ss Seq
CTATCTCTTTGTCTCTACAGAGC
3' ss Score
10.56
5' ss Seq
ACAGTATGA
5' ss Score
2.27
Exon sequences
Seq C1 exon
TGTTACTGGCATCAGGAGATGCAATACAGTCACCAAGAAGTGTGCCACAGTCACCTAGCGGTACATTGCGGTCACCAGGCAATATGTCAGAGTCACTTGGAGATACACCAAACTTATCAGGAGATGTGTCAAACTCACCACAAGCATTATTGGACTTAGCAAGAGACAGGCCGAAGTCTTCCCCGAATGATGTGCAGAATCGTGATACTCCTATGGATATCTCAGCTTCATCCTCTTCAAGTTGCTCTGCTAACCCACAATCTCGACAGTCTGAATTTAAATTAGATAAAGTTCCTTGGCTCACTATCACAGATAGCTCAGCCAGGAGAGAGAAATCACTGCCACAGCTTGCCAACCCTGGGTCTGCTCAGATACAAGGACAAATACCACAAGTTGGGGTATACAATAGACCTTGCCTGCATAGACTGAAATACTTCTTACGGCCTCCAGTACATCATCTCTTCTTCCAGACATTAATACCAGATAAAGATACACGAGAG
Seq A exon
AGCAAGGGTCAGAAATTAGAACCCATCCCTCATCGAAGACTAAGAATGGTGACAAACACTATTGAAGAAAACTTCCCTTTGGGGACTGTGCAGTTTTTAATGGACTTTGTTTCACCCCAACATTACCCACCCAGAGAAATTGTGGCTCACATCGTCCAGAAAATCCTGCTCAGTGGCTCTGAGACTGTGGATGTCCTCAAGGAGGCCTACATGCTTCTCATGAAAATCCAACA
Seq C2 exon
GCTGCATCCAGCCAATGCCAAGACAGTGGAGTGGGACTGGAAACTGCTCACCTATGTCATGGAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043183_MULTIEX1-7/8=5-8
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=0.115 C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000121401fB16653
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTTGCTCTGCTAACCCACA
R:
TTTCCAGTCCCACTCCACTGT
Band lengths:
306-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types