MmuEX0001357 @ mm10
Exon Skipping
Gene
ENSMUSG00000043183 | Simc1
Description
SUMO-interacting motifs containing 1 [Source:MGI Symbol;Acc:MGI:2442599]
Coordinates
chr13:54503779-54537236:+
Coord C1 exon
chr13:54503779-54504004
Coord A exon
chr13:54529154-54529223
Coord C2 exon
chr13:54537082-54537236
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGATGTCACTTGACTTTCAGGCT
3' ss Score
6.84
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GCGACGCCTTCGCTGCAGTCGCTTCAGCAGCTGGAACCGGAGTCGGAGTCGCCGGGGCCGCTCGCCGCTCGCGCGTGGCTCCGCCGGGCCCGTAGCCATGGAGGACTTTATCGTGATCTCCGACGACAGTGGCTCCGAGAGCTCGGCCGGGACCCGCTCGGGCAGGGCGCGGAGGCTGCGCCGGGCCCTGTCTCGGACCCCCGGCGCGCTGCCCCGCCGAACCGTG
Seq A exon
GCTGCATCCAGCCAATGCCAAGACAGTGGAGTGGGACTGGAAACTGCTCACCTATGTCATGGAGGAAGAG
Seq C2 exon
GGACAAACTCTGCCTGGACGAGTTCTCTTTCTACGCTACGTAGTGCAAACCCTGGAAGATGACTTCCAGCAGATCTTGAGGAGACAGCGGCAGCACCTACAGCAATCCATTGCAAACACTGTTCTGTCATGTGACAAACAGCCTCACAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043183_MULTIEX1-8/8=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.118 C2=0.084
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTGATCTCCGACGACAGT
R:
CCAGGGTTTGCACTACGTAGC
Band lengths:
172-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types