Special

MmuEX0001491 @ mm9

Exon Skipping

Gene
ENSMUSG00000051278 | 4930422G04Rik
Description
RIKEN cDNA 4930422G04 gene [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127298797-127304157:+
Coord C1 exon
chr3:127298797-127298940
Coord A exon
chr3:127301619-127301733
Coord C2 exon
chr3:127303898-127304157
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTTCCACGTTGTCTCTGTAGTCA
3' ss Score
8.34
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTGATCTTTGGGTTATTTCAAAAACCCTAGACTTTGAACTAGATACTTTCATTGCATGCAGTGCCTTCTTTGGGCCATCTTCTGTCAATGAAGTGGAGCTGCTGCCTTTGAAAGGTTATTTCCCTTCTAATTGGCCCACCAACA
Seq A exon
TCACAGTCCATGCATTGTTGGTTTGTAATGCCAGCACAGAGCTGACAACTCTACAGAACATTCAGGACTACTTTAACCCAGCTGCTCTTCCACTAATGCCATACCTGCTAGCAAT
Seq C2 exon
GTCTCAGTCAGCTACAGTTAGCAGTAAAAATATCAGTAAAAGAAAATTTATCCCACCAGCCATTACAAGCATTAAAACAAAAACGGAACTCCACCTTGGAGCGACCCTGCAGTTAGCTAGGGAGTTGATTAACGTACACAGGTTGAACAAGGACCAAGCTACAGCACTAATTCAGATAGCTCAAATGATGGCATCCCAAGGAAGTGATGAAGATGCCCTGGAGCCCTTCGGCCATTCCCTGCCTATCACAGTCATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278-'25-18,'25-17,27-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
PF130861=AAA_11=PU(17.1=45.5)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000044432





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr4:112562371-112562485 
HIGH PSI
HsaEX6085861
(ZGRF1)
Human
(hg19)
chr4:113483527-113483641 
HIGH PSI
HsaEX6085861
(C4orf21)
Rat
(rn6)
chr2:231922955-231923069 
ALTERNATIVE
RnoEX0101907
(Zgrf1)
Cow
(bosTau6)
chr6:14213551-14213665 
HIGH PSI
BtaEX6030029
(ZGRF1)
Chicken
(galGal4)
chr4:56721514-56721628 
ALTERNATIVE
GgaEX0018157
(ZGRF1)
Chicken
(galGal3)
chr4:58680007-58680121 
ALTERNATIVE
GgaEX0018157
(C4orf21)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCCTTCTTTGGGCCATCTTCT

				
R: 
GTGCTGTAGCTTGGTCCTTGT

				
Band lengths: 
249-364

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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