GgaEX0018157 @ galGal3
Exon Skipping
Gene
ENSGALG00000012068 | C4orf21
Description
NA
Coordinates
chr4:58678481-58681329:+
Coord C1 exon
chr4:58678481-58678627
Coord A exon
chr4:58680007-58680121
Coord C2 exon
chr4:58681070-58681329
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTGTGGCCTTTTCAGCAT
3' ss Score
9.59
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
ATGATATTTGGGTTGTTTCAAAGACTCTGAATTTTGATTCCCTTGATACCTTCATTGCAAGTAGTGCTTTCTTTGGACCAACCCATAACAACGAAGTAGAACTACTACCACTGAAAGGCTATTACCCCTCAAACTGGCACTCACATA
Seq A exon
CATCAGTTCATGCCTTGCTAGTTTGTAATGCCAGTGGTGAGCTTATATCCTTAAGAAATATGGAAGAATACTTCAACCCATCTACTTTACCACTAATACCGTATCTACTAAAAAT
Seq C2 exon
GAATTCTGATTCTGAAAAATCAACTAGAAGAATCAACAAAAGAAAATTTATTCCACCTGCCATGAGCCTGGTAGGCAAAAAGACCTATGGATCTGTCAGCACTGAAGTGGCAATGGAACTAGCTGAAAAGATGATCCTGACGTTCTCATTGAATCCAGATCAAGCTATGTCTCTGATTCACATAGCTCAGATGATGACCTCACATGAAAATATGAAACCAGCGGAAGAACATCAGATTTTCCCTATCACAATCATACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012068-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF130861=AAA_11=PU(16.4=43.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCAAACTGGCACTCACAT
R:
TCTGATGTTCTTCCGCTGGTT
Band lengths:
258-373
Functional annotations
There are 0 annotated functions for this event