RnoEX0101907 @ rn6
Exon Skipping
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231920291-231925876:+
Coord C1 exon
chr2:231920291-231920434
Coord A exon
chr2:231922955-231923069
Coord C2 exon
chr2:231925614-231925876
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTCTGCCTTGTCTCTGTAGTAA
3' ss Score
8.9
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTGATCTCTGGGTTATTTCAAAAACCCTAGACTTTGAACTAGATACTTTCATTGCATGCAGTGCCTTCTTTGGGCCATCTTCTGTCAACGAAGTAGAACTGCTGCCTTTGAAAGGCTACTTCCCTTCTAACTGGCCCACCAACA
Seq A exon
TAACGGTCCATGCATTATTGGTTTGTAATGTCAGCACAGAGCTGACAATGCTGCAAAACATTCAGGACTACTTTAACCCAGCGACTCTTCCACTAATGCCATACCTGTTAGCAAT
Seq C2 exon
GTCTCAGTCAGCTACAGTTAGCAGTAAAAATGTCAGTAAAAGAAAATTTATCCCACCAGCCATTACAAGCATTAAAACAAAATTTGAACTCCTCCACTTGGGAGCAACCTTGCAGTTGGCCAGAGAGTTGATTAACGTGCACCGGTTGAACAACGACCAAGCTTCAGCACTAATGCAGATAGCTCAGATGATGGCATCCCGAGGCAGCGATGAAGATGCACTGGAGCCCTTCAGCCATTCCCTGCCTATCACAGTCATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF130861=AAA_11=PU(17.1=44.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGCCATCTTCTGTCAACG
R:
TGCTGAAGCTTGGTCGTTGTT
Band lengths:
244-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]