RnoEX0101899 @ rn6
Exon Skipping
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231914734-231923069:+
Coord C1 exon
chr2:231914734-231914873
Coord A exon
chr2:231920291-231920434
Coord C2 exon
chr2:231922955-231923069
Length
144 bp
Sequences
Splice sites
3' ss Seq
AAAAGTGTTTGTCCTTCCAGGTG
3' ss Score
9.61
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GAAAGGATTTGATTTTCAGAAAAAACAGCATGGTAAACTAAAAAAACTTGCAACTGTAAATCCTGAATTTTACAGTGAAACAAAAAGTAAACTTTATCTTAAGCTGAGTCGGAAGGAGAGCTCTTCGGTTTATAGTAAAG
Seq A exon
GTGATCTCTGGGTTATTTCAAAAACCCTAGACTTTGAACTAGATACTTTCATTGCATGCAGTGCCTTCTTTGGGCCATCTTCTGTCAACGAAGTAGAACTGCTGCCTTTGAAAGGCTACTTCCCTTCTAACTGGCCCACCAACA
Seq C2 exon
TAACGGTCCATGCATTATTGGTTTGTAATGTCAGCACAGAGCTGACAATGCTGCAAAACATTCAGGACTACTTTAACCCAGCGACTCTTCCACTAATGCCATACCTGTTAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980-'23-18,'23-17,25-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTTGCAACTGTAAATCCTGAA
R:
TGCTAACAGGTATGGCATTAGTGG
Band lengths:
210-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]