BtaEX6030030 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013198 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr6:14207389-14213665:+
Coord C1 exon
chr6:14207389-14207528
Coord A exon
chr6:14210935-14211078
Coord C2 exon
chr6:14213551-14213665
Length
144 bp
Sequences
Splice sites
3' ss Seq
AGAAGTGTTTGTCTTTTCAGATG
3' ss Score
7.91
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GAAAGGATTTGATTTTCAAAGAAAACGGTATGGTAAACTAAAGAAGTTTACTACTGTAGATCCTGAATTTTATAATGAACCTAAGAGCAAACTTTATCTTAAACTGAGTCGGAAAGAAAGTTCATCTGCTTACAGCAAAG
Seq A exon
ATGATCTTTGGGTGGTTTCGAAAACCCTAGACTTTGAATTGGATACTTTTATTGCATGCAGTACTTTCTTTGGACCATCATCTATCAATGAGGTAGAGCTTCTACCTTTGAAAGGTTATTTCCCTTCGAACTGGCCCACTAACA
Seq C2 exon
CAGTGGTCCACGCCTTATTGGTTTGTAATGCCAGCACAGAGCTGACCACTTTAAAAAATATTCGGGACTGCTTTAATCCAGCTACTCTACCTCTAACACAGTACCTCTTAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013198-'6-8,'6-7,7-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTTTCAAAGAAAACGGTATGGT
R:
TGTTAAGAGGTACTGTGTTAGAGGT
Band lengths:
244-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]