GgaEX0018156 @ galGal3
Exon Skipping
Gene
ENSGALG00000012068 | C4orf21
Description
NA
Coordinates
chr4:58677304-58680121:+
Coord C1 exon
chr4:58677304-58677440
Coord A exon
chr4:58678481-58678627
Coord C2 exon
chr4:58680007-58680121
Length
147 bp
Sequences
Splice sites
3' ss Seq
GAACTCTGTTGTTTTCACAGATG
3' ss Score
9.21
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GAAAGGCTATGAAATTGGAACACGGTGTAGCAAACTCAAGAAACTTATGAATGTGCATGCTGAATCTGATGGGGATTCCAAAAGTAAATTGTACCTCAAGCTAAGCAGAAAGGAGCATTATTCCCTCTTTAGCAAAG
Seq A exon
ATGATATTTGGGTTGTTTCAAAGACTCTGAATTTTGATTCCCTTGATACCTTCATTGCAAGTAGTGCTTTCTTTGGACCAACCCATAACAACGAAGTAGAACTACTACCACTGAAAGGCTATTACCCCTCAAACTGGCACTCACATA
Seq C2 exon
CATCAGTTCATGCCTTGCTAGTTTGTAATGCCAGTGGTGAGCTTATATCCTTAAGAAATATGGAAGAATACTTCAACCCATCTACTTTACCACTAATACCGTATCTACTAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012068-'6-7,'6-6,7-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTATGAAATTGGAACACGGT
R:
AGTAGATACGGTATTAGTGGTAAAGT
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]