MmuEX0001490 @ mm9
Exon Skipping
Gene
ENSMUSG00000051278 | 4930422G04Rik
Description
RIKEN cDNA 4930422G04 gene [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127292887-127301733:+
Coord C1 exon
chr3:127292887-127293026
Coord A exon
chr3:127298797-127298940
Coord C2 exon
chr3:127301619-127301733
Length
144 bp
Sequences
Splice sites
3' ss Seq
AAAGATGTTTGTCCTTCCAGGTG
3' ss Score
9.35
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GAGAGGATTTGATTTTCAGAGAAAACAGTGTGGTAAACTAAAGAAGCTAACTACTGTAAATCCTGACTTTTACAGTGAAACAAAAAGTAAGATTTATCTTAAGCTGAGTCGGAGGGAGAGCTCTTCAGTTTATAGTAAAG
Seq A exon
GTGATCTTTGGGTTATTTCAAAAACCCTAGACTTTGAACTAGATACTTTCATTGCATGCAGTGCCTTCTTTGGGCCATCTTCTGTCAATGAAGTGGAGCTGCTGCCTTTGAAAGGTTATTTCCCTTCTAATTGGCCCACCAACA
Seq C2 exon
TCACAGTCCATGCATTGTTGGTTTGTAATGCCAGCACAGAGCTGACAACTCTACAGAACATTCAGGACTACTTTAACCCAGCTGCTCTTCCACTAATGCCATACCTGCTAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278-'22-17,'22-16,25-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTTTCAGAGAAAACAGTGTGGT
R:
GCTAGCAGGTATGGCATTAGTGG
Band lengths:
243-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: