RnoEX0101906 @ rn6
Exon Skipping
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231912923-231920434:+
Coord C1 exon
chr2:231912923-231913119
Coord A exon
chr2:231914734-231914873
Coord C2 exon
chr2:231920291-231920434
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTAATTTTTCAGGAA
3' ss Score
11.47
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GGCCGTCTATTTTACACATGTGATAAGCCAAAAGGTAATCAATGTAAATTTTTCAAATGGCTTGAGGATGTGACTCCAGAACAGTTATCACAGAATGAGTCTCAGCCCAACATGATTTTTAATGATATTAAGAGTATTGGCTCGTATTTAAGAAGTCAGAAGATAGCAGTCTATGAAGAATGCCAGCTTTTGCTGAG
Seq A exon
GAAAGGATTTGATTTTCAGAAAAAACAGCATGGTAAACTAAAAAAACTTGCAACTGTAAATCCTGAATTTTACAGTGAAACAAAAAGTAAACTTTATCTTAAGCTGAGTCGGAAGGAGAGCTCTTCGGTTTATAGTAAAG
Seq C2 exon
GTGATCTCTGGGTTATTTCAAAAACCCTAGACTTTGAACTAGATACTTTCATTGCATGCAGTGCCTTCTTTGGGCCATCTTCTGTCAACGAAGTAGAACTGCTGCCTTTGAAAGGCTACTTCCCTTCTAACTGGCCCACCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068397=zf-GRF=PD(51.1=34.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGAATGAGTCTCAGCCCA
R:
GTTGGTGGGCCAGTTAGAAGG
Band lengths:
253-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]