HsaEX0010987 @ hg38
Exon Skipping
Gene
ENSG00000138658 | ZGRF1
Description
zinc finger GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr4:112563131-112584174:-
Coord C1 exon
chr4:112583978-112584174
Coord A exon
chr4:112581663-112581802
Coord C2 exon
chr4:112563131-112563274
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTATTCCCTTTTCAGAAA
3' ss Score
10.78
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGTCGTCTCTTTTATACATGTGATGGACCCAAAGCTGATCGATGTAAATTCTTTAAATGGCTTGAGGACGTGACTCCAGGATATTCAACACAGGAAGGAGCTCGACCTGGCATGGTTTTAAGTGATATTAAGAGTATTGGCTTATATTTAAGAAGTCAAAAGATACCACTTTATGAGGAATGCCAGCTTTTGGTGAG
Seq A exon
AAAAGGATTTGATTTTCAGAGAAAACAGTATGGCAAACTAAAGAAGTTTACTACTGTAAATCCTGAGTTTTATAATGAACCAAAAACCAAACTTTATCTTAAGCTAAGTCGGAAGGAAAGATCTTCAGCTTATAGCAAAA
Seq C2 exon
ATGATCTTTGGGTGGTTTCAAAAACCCTAGACTTTGAGCTGGATACTTTTATCGCATGTAGTGCTTTCTTTGGACCATCATCTATCAATGAGATAGAAATACTGCCTTTGAAAGGCTATTTCCCTTCTAATTGGCCCACTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138658_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068397=zf-GRF=PD(51.1=34.8)
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000505019fB30534
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACAGGAAGGAGCTCGAC
R:
AGTGGGCCAATTAGAAGGGAA
Band lengths:
252-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development