BtaEX6030031 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013198 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr6:14203458-14211078:+
Coord C1 exon
chr6:14203458-14203654
Coord A exon
chr6:14207389-14207528
Coord C2 exon
chr6:14210935-14211078
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTACTCATTTTGCAGGAA
3' ss Score
10.86
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGTCGTCTCTTTTATACCTGTGATGGACCCAAAGCTGACCAATGTAAATTTTTTAAGTGGTTTGAAGAAATGACCCCAGGATATTTAACACAGGAAAAATCTCTACCTAGCATGGTTTTAAGTGATATAAAAAGTATTGGCTTCTACTTAAGAAGTCAAAAGATACCCCTCTATGAGGAATGCCAACTTTTCGTGAG
Seq A exon
GAAAGGATTTGATTTTCAAAGAAAACGGTATGGTAAACTAAAGAAGTTTACTACTGTAGATCCTGAATTTTATAATGAACCTAAGAGCAAACTTTATCTTAAACTGAGTCGGAAAGAAAGTTCATCTGCTTACAGCAAAG
Seq C2 exon
ATGATCTTTGGGTGGTTTCGAAAACCCTAGACTTTGAATTGGATACTTTTATTGCATGCAGTACTTTCTTTGGACCATCATCTATCAATGAGGTAGAGCTTCTACCTTTGAAAGGTTATTTCCCTTCGAACTGGCCCACTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013198-'5-7,'5-4,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068397=zf-GRF=PD(51.1=34.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCAAAGCTGACCAATGT
R:
GGTCCAAAGAAAGTACTGCATGC
Band lengths:
249-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]