MmuEX0001487 @ mm9
Exon Skipping
Gene
ENSMUSG00000051278 | 4930422G04Rik
Description
RIKEN cDNA 4930422G04 gene [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127290859-127298940:+
Coord C1 exon
chr3:127290859-127291055
Coord A exon
chr3:127292887-127293026
Coord C2 exon
chr3:127298797-127298940
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTGTTTTGTTTTCAGGAG
3' ss Score
10.81
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GGCCGTCTCTTTTATACATGTGATAAGTCAAAAGATAATCAATGTAAATTTTTCAAATGGCTTGAGGAAGTGACTCCAGGACAGTTACCACAGAATACGTCTCAATCCACCATGGTTTTTAATGATATTAAGAGTATTGGCTCATATTTAAGAAGTCAAAAGGTACCAGTCTATGAAGAATGCCAGCTTTTGTTGAG
Seq A exon
GAGAGGATTTGATTTTCAGAGAAAACAGTGTGGTAAACTAAAGAAGCTAACTACTGTAAATCCTGACTTTTACAGTGAAACAAAAAGTAAGATTTATCTTAAGCTGAGTCGGAGGGAGAGCTCTTCAGTTTATAGTAAAG
Seq C2 exon
GTGATCTTTGGGTTATTTCAAAAACCCTAGACTTTGAACTAGATACTTTCATTGCATGCAGTGCCTTCTTTGGGCCATCTTCTGTCAATGAAGTGGAGCTGCTGCCTTTGAAAGGTTATTTCCCTTCTAATTGGCCCACCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278-'20-16,'20-13,22-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068397=zf-GRF=PD(51.1=34.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTGAGGAAGTGACTCCA
R:
GCAGCAGCTCCACTTCATTGA
Band lengths:
245-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: