GgaEX1065244 @ galGal3
Exon Skipping
Gene
ENSGALG00000012068 | C4orf21
Description
NA
Coordinates
chr4:58676458-58678627:+
Coord C1 exon
chr4:58676458-58676648
Coord A exon
chr4:58677304-58677440
Coord C2 exon
chr4:58678481-58678627
Length
137 bp
Sequences
Splice sites
3' ss Seq
TGGAAATTACAACTTAACAGGAA
3' ss Score
3.12
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGCCGTCTGTTCTATGCCTGTGATGCCCCAAGAGCTGAGCGGTGCTCATTTTTCAAGTGGATAGAAGAAGTGAATCCTTCACAAATAAAAAAATTCAGACCAAGTGTAGTGCTTCATGATTTAAGAAGTATTGGGGCGTACCTCCGAAATGAAAAGATTTTTGTCTTTGATGGATGCCAGCTTTTTGTGAG
Seq A exon
GAAAGGCTATGAAATTGGAACACGGTGTAGCAAACTCAAGAAACTTATGAATGTGCATGCTGAATCTGATGGGGATTCCAAAAGTAAATTGTACCTCAAGCTAAGCAGAAAGGAGCATTATTCCCTCTTTAGCAAAG
Seq C2 exon
ATGATATTTGGGTTGTTTCAAAGACTCTGAATTTTGATTCCCTTGATACCTTCATTGCAAGTAGTGCTTTCTTTGGACCAACCCATAACAACGAAGTAGAACTACTACCACTGAAAGGCTATTACCCCTCAAACTGGCACTCACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012068-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068397=zf-GRF=PD(51.1=35.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGCCCCAAGAGCTGAG
R:
TGGGTTGGTCCAAAGAAAGCA
Band lengths:
257-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]