MmuEX0001494 @ mm9
Exon Skipping
Gene
ENSMUSG00000051278 | 4930422G04Rik
Description
RIKEN cDNA 4930422G04 gene [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127286502-127289121:+
Coord C1 exon
chr3:127286502-127287088
Coord A exon
chr3:127287574-127287712
Coord C2 exon
chr3:127288937-127289121
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTGGTTTCATTCTATTTCAGGAG
3' ss Score
9.77
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
CAGCTGATGATGGCCCAGCTGTCTTAGATCCCTGTTCATTCATGATTGATGATGACGCGCGAGAGCCTTCTGGTTCTTCCATGTTGAACCTGTGTGAAGAGTCAGGTCTTTCATTCGACCTTGGACTTGAGGGCCAGGGTGGGACTCCAGGAGGTGTTTCACTGCTTCCTAAGAGTTCTACTCAAAGCAAGTGGCTGAAATATCAAAACCCACCCCAGTGCAACTCAACTGCTCCGAACAGACTTGCCAGCGAGGTGACCGAGGGTCTCTTTGCTGAAGCGGTGTCTGGCTTGCATTTTAGCCACACAAGTGAGAGTGAAAGTTCTGTTGACCCTGTGCGCCTGCAGATGATAAAAGGCTTGCTCCATCAACAGCAGCAGGATTTGGTTTCCAGAAAGCAAGCTTTTTCTCTGACTTTAAATCAGACTTGCAAGACTCAGGAACATGAGACTGTGTTAGGAAGCTCTGCCAGCAAGAACTGCAGAGCCAAAGATCTACAG
Seq A exon
GAGATAAATAATTCTGATCTGTGCTTCCCAAATGGGCAGAAAATAATATCAGCTTATCTCCCACAAAGGCAAGTTCACATACCTGCTGTTTTCCAGTCTCCTGCTCACTATAGGCAGGTCTTTACAGCTTCCATCATAG
Seq C2 exon
AGCATCTGAATATATTGCTGTTTGAATTGGCACAAAGGCTGTACAAAGCACTTTCCAAAGTTGACATATCCTTTTATACATCGTCAAAAGGAGAGACAATGAGAAGTGGAAAAAATAATTCACCATCCTGCCACCATAATCAACCTGCCAAGCTTGTCATGGTTAAAAAAGAAGGTCCAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.000 C2=0.242
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF068397=zf-GRF=PU(44.4=32.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTCTGGCTTGCATTTTAGC
R:
CCTTTGTGCCAATTCAAACAGCA
Band lengths:
258-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: