RnoEX6011493 @ rn6
Exon Skipping
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231908553-231911316:+
Coord C1 exon
chr2:231908553-231909154
Coord A exon
chr2:231909765-231909903
Coord C2 exon
chr2:231911132-231911316
Length
139 bp
Sequences
Splice sites
3' ss Seq
GTCAAACCATTCTATTTCAGGAA
3' ss Score
7.94
5' ss Seq
TCGGTATGA
5' ss Score
7.72
Exon sequences
Seq C1 exon
CAGCAGTCTTAGATTCTTGTTCATTTATGATCGATGATGACACACGAGAGCCTTCTGGTTCTTCCAGGTTGAACCTGTGTGAAGAATCAGGTCTTTCATTTGACCTTGGACTTGAGGACCAGGATGGGATTCCACGAGATGTCTTACTGCTTCCTAAGAGTTCTACTCAAAGCAAGTGGCTGAAATATCAAAACCCATCCCACTGCAACTCAGCTGCTCTGAACAGAATTGCCAGTGAAGTGACAGAGGATCTCTCTGCTGAGGCTGTCTCTGGCTTGCATTTTAGCCACACAAGTGAGAGTGAGAGTTCTGTAGACCCTGTGCACTTGCAGATGATAAAAGGCATGCTCTATCAACAGCAGCAGGATTTTACCAGTCAAGATTTGGTTTCCAGACAGAAAGCTCTCTCTCTGAATTTAAATCAGACCTCCAGGACTGGGGAACTTCGGACTGCGTTAGGAAGCTCTGCCAGCAGTAATTGCAGAGTCAGGGATGGACAG
Seq A exon
GAAATAAATAATTCTGATCTATGCTTCCCAAATGGGCAGAAAATACTATCGGCTTACCTTCCTCAAAGGCAAGTTCACATACCAGCTGTTTTCCAGTCTCCTGCTCACTATCGGCAGATCTTTACGTCTTCCATCATCG
Seq C2 exon
AGCATCTGAATATATTGTTGTTTGGATTGGCACAAAGGCTGTACAAAGCACTTTCCAAAGTTGACATATCCTTTTATACATCGTCAAAAGGAGAGATGATGAAAAGTGGAAAAAATAATTCACCATCCTGCCACCATAATCAACCTGCCAAACTTGTCATGGTTAAAAAAGAAGGACCAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980-'19-13,'19-12,20-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.000 C2=0.226
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF068397=zf-GRF=PU(44.4=32.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAGACCCTGTGCACTTGC
R:
GTGCTTTGTACAGCCTTTGTGC
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]