GgaEX0018155 @ galGal4
Exon Skipping
Gene
ENSGALG00000012068 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr4:56715571-56717410:+
Coord C1 exon
chr4:56715571-56715671
Coord A exon
chr4:56716614-56716752
Coord C2 exon
chr4:56717310-56717410
Length
139 bp
Sequences
Splice sites
3' ss Seq
ACTTATTTATTTATTTTTAGGAC
3' ss Score
10.07
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GGAAGTTACTTTCTCTTCACTTAAATCAGACTCCTTTAACTGAACCAGCACAAAAGGTGTTGAGTCATCTGACCTGCCGCACTGTGACAGGAGATGTCCAG
Seq A exon
GACATAACAGTTTCTGAGTTGTCTTTTCCTAATGCAGATAAAGTAAAACATGCTAGTCTTCCTAAAAGAAAGATTGCCATACCAACTGAGTTTCAGTCTCACGTTCACTACAGACAGGTTTTTAAAGCTGCTTTGACAG
Seq C2 exon
AACATTTAAACATAATGCTTTTCGAGTTGTCACAAAGATTACACAGCGCTCTTTTGAAAGTGGATATATCATCTTACACTTCACTGGAAGATGAGCAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012068-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCTCTTCACTTAAATCAGACTCC
R:
GCTTTGCTCATCTTCCAGTGA
Band lengths:
194-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]