BtaEX6030033 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013198 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr6:14200688-14202670:+
Coord C1 exon
chr6:14200688-14200933
Coord A exon
chr6:14201834-14201972
Coord C2 exon
chr6:14202486-14202670
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTTGAATTATTGCATTTCAGGAG
3' ss Score
5.35
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATGCGTTTTAGTAACACAGGTGAAAGAGAGAATGATGCTGTGAATGAAAGTTCTTTAGATTCTGTGTATTTACAAATGATGAAACACATGCTTCAACAGCAGCAGCAGGATTTTAGCAGTCAAGATTCGGTTTGCAGAAAGAAGGCATTTTCTTTGAATATAAACGAGGCTTCTAAGACTGAGGAAGTTCAGAATATGTTAGGAGAGTATGCCTGCTACAACTGCAGTGTAACAGGAGATTTACAG
Seq A exon
GAGGTAAAAGACTCTGAGCTATGCTTCCCAAGTGGGCAGAAAGTAAAATCTGCATGTCTTCCCCAAAGGCAGATTCACATACCAGCTGTTTTTCAGTCTCCTGCGCATTATAAGCAGGTTTTTACATCTTGTCTCACAG
Seq C2 exon
AACATTTAAATATATTGCTATTTGGATTGGCACAAAGGTTGCACAAAGCTCTTTCAAAAGTTGACATATCATTTTACACATCATCAAATGGAGACAAACTGAAAAATGTAGAAAATAATGTGCCATCCTGCCATCATCAGCAGCCTGCAAAACTGGTCATGGTTAAAAAGGAAGGTCCAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013198-'2-2,'2-1,3-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF068397=zf-GRF=PU(44.4=32.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGGCTTCTAAGACTGAGGA
R:
CCATGACCAGTTTTGCAGGCT
Band lengths:
245-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]