MmuEX0002382 @ mm10
Exon Skipping
Gene
ENSMUSG00000084808 | 9430091E24Rik
Description
RIKEN cDNA 9430091E24 gene [Source:MGI Symbol;Acc:MGI:1924618]
Coordinates
chr8:111128886-111145459:-
Coord C1 exon
chr8:111145404-111145459
Coord A exon
chr8:111137443-111137552
Coord C2 exon
chr8:111128886-111129786
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGTGCTTTCCAATTATTTAGGAG
3' ss Score
8.41
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
CTTCACTTCCGCCGGGCGTTGCTGAGCGCGCTGCCCGCGAGATGCGGGCCCCTGAG
Seq A exon
GAGACCTGTGAAAGGGTCAGGGGTTGCTCTAGAGCTACCATTTCTGCTAACAACTTGCATCTACTCCTGAGAAGCCCAGCTCTACCACACTGGTGGATCAGATATTCTAG
Seq C2 exon
CCTGTCCAAGACTGGATGGGATACACCATTCTAAATCTGTTGGTACTCAGGAATCTTGGGAAACTGGTACCCCTGCCCAGAGCCCTCTCACCTCTATGGGGATATACAGCATGAAGCCTGGCTCTCCCGTGTGCGTCATACTCATCACCCGGATCCCATTTGCATAGCCCACACTCATCTCCTACAAAGAAAAGGAAAGCAGTCAGTACTCGTCCCTCCTGACAGTCAAGAGACTGAGTCCCGAGGGGAGCCTGTCAGTACCCACCCTATGTTAACCCTGGAAGAGCTACAACCAAGGAAAGCATCTCTCTTTACCAGCTCATGCTAAAACATTGAGTTAGCCAAGCAGCGTTAGGAACAATGAAGACCAACCAAGTGTTTTCTCTGGAGGACTCTGTAAGACACATAAAGGACAATGCCTGCAGAATACAATTCATGCACTCTGGGACCAAAAGCTCAGTTTCTAGTGTTACAGCTGCTCAGTCGCCTTGAAAGGGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000084808_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCGGGCCCCTGAG
R:
TTGACTGTCAGGAGGGACGAG
Band lengths:
247-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types