MmuINT0003809 @ mm10
Intron Retention
Gene
ENSMUSG00000033624 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:MGI Symbol;Acc:MGI:2442188]
Coordinates
chr8:111132877-111137074:+
Coord C1 exon
chr8:111132877-111133059
Coord A exon
chr8:111133060-111134607
Coord C2 exon
chr8:111134608-111137074
Length
1548 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
TTTTCCCTTTTTTCTCCTAGGGC
3' ss Score
11.78
Exon sequences
Seq C1 exon
TACGCTCTGCATGTCTACAATGAGGTGATGAGTGTTGGACAGAAATATGGAATCCGGAATGCTGGGTATTATGCCCTCAGAAGTCTCCGAATTGAGAAGTTTTTTGCTTTCTGGGGTCAGGACTTAAACACCCTTACCACGCCTTTGGAATGTGGAGGAGAATCTCGAGTGAAGTTAGAGAAG
Seq A exon
GTATTATTTATCTACATCTCTCTGTGCCTCTCAGCCAAACAGTTGTGATGTGTCTAAGATAGGAAGAGCTGAACAAATAAAGAAGAGCAGGAAAGATAGGGAGGTGCTAGCTAGCAGCAGGTAAGTCATGAGGAATAGTGTGTCCTCAGGGCAGGACACTTACCTGTGGGATGCACATTTCAGATAAAATCCCAACACCTGGTTACATTGACATACATTTTTTAGTCAATTGTGGTCACAAATAATATTGTGAATGTACCACAGTATTCATCTAAATTAGTCATCTTACAGCCAGCTGCCTAATTTTCTCTTAAAATATATTTTTAACTTTTAATTATGTGAATGCATGTATGTCTGCATGAGGTGTATTTGAATGCAGTTGCCAAAAGAGGCCACTGGGAACAGAACTTGGGTCCTCTACAACTCTTGTCTCTCCAGCCCCAGGTCTTTTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCGATCATTACGGATGGTTGTGAGCCACCATATGGTTGCTGGGATTTGAACTCCGGACCTTTGGAAGAGCAGTCGGGTACTCTTACCCACTGAGCCATCTCACCAGCCCCCAGGTCTTATTATTTAGAGAAGTATAGTTCAAAAGGTTAGTCTACTGTCTTCCACCTCTGAACCTCACCCGGTGTCTTCTCAGAAGCAGCAGTTGGTTTCTATTCTAGAGTGTTAGAATGGGCAAGTATGCCAGTGTGTGTTCCCCTGCCCACTTCCAATCTAGATCGTGTTAAACTTGCTTTACTTACTACAGTGTATTTAGGCAGTGCCCTAACAGTACACCTGTAGACAAGGTCCTGCTATGTAGTCCTGGCTGACCTGGAAATTTCTGTGTAGACCAGGCTGTGTCTCATCATGCCCAGATAGTACTCACTTATTCATTTATTTACTTACTAATTTTGGCCACTGCATATAACTAGACATAAAGAAATTATACATAATTTTTTGTGTGCTGTGAAAATGCTAACTTGCTTAAAATGACCTGTATTCTAATTATAGAGATAATCACTATTAAGTTTGTTTACCTGTATATATAAGTATATTGGTACATACATATGCAGGGGCTTCTTGCTGGAAATACACAAAGGTTACATACCTCTAACTCTGTGGAATTGGTTCTTTGCTGCCAACTTTCCTTGGGTTTTGGTGCTCAAACTCCAGTTTCTAGGCTTGTGTGATAACAGCCTTTACCTGCTGAACCATCCTGCCATCCCTCTATCAAGTATTCTTGATTAACTTTTCAGTTTTTCTAACATTCTTTGTTACTAGGCCCGTGATTGAAATCTGTTCACAGAAGTATGTACTTCAGCTGTGTCTCTGCTGTGTACAAAGCTTTTCATAATGCCTTCCTCAAACATCATTTTCTAAAAGCTAGCAGGAATGTAGTCTAGATGTACCCTCTACTTTTACATGCCAAGGGCCATCTTATAGACTGGTATCTCAGGGATTTTTTCCCTTTTTTCTCCTAG
Seq C2 exon
GGCATAGACTTCATTGGTCGGGATGCCCTGCTGCAGCAGAAGCAGACCGGGGTATATAAGCGCCTTGCTATGTTCATTCTGGACGACCATGACACAGACCTTGATTTGTGGCCTTGGTGGGGAGAACCCATTTACCGGAACGGAAAGTATGCTGGCAAGACCACCAGTAGTGCCTATAGCTACACACTGGAGCGCCATGTATGCCTGGGTTATGTACACAATTTTTCTGAGGACAGTGGGGAAGAGCAGGTGGTGACAACAGATTTCATCAACCGAGGAGAATATGAAATTGACATTGCAGGACATCGGTTTCAGGCCAAGGCCAAGCTCTACCCTGTCACCTCTTTTTTCACTCACAAGCGTAGAAAGGACGATGTGGAGCTGAGCGACTTTCATGGGAAGTAACGCAAGACACTCCCTTCCCACATTCTTGCCATGAGGAGCATCGTTCTCAGAGCCGAGTTTCCCTCCGTCCTGGTCTCCTCACTGAAGGTACCTTTGTCCTTGCCTAGGTTCAATTTGACCTAAACTTTTTCCTTGAAAACCTTTCTTGTCTTCCCATTTTCTCCCATTTGCTGTTACCCCTCCTAATAATCCAGGCTCTTCTCATCCCTCCAGCAGGCTCACATACCCACAATGGCGGGCAGAACCCACTTGTGGAGTGGTATTAGGGTGACAGACTGATTTTAAATTCAGTGTTAGGCAAGTTGGTATTATTTAAGTCTTAGGGTAAATATCCATTTCCCTTCGGCTTAGATTCTTACCAAGTAACCTCCTAGTTTCGGTAGATGATTTTGTGTCTGATGCAGCCCTGGGAATAACTTGTGTCTTAACCAGGCAGATAATTCTGTTCCACTGTGCTGAGGTTGCCACCTGATACCTCGTAACCATCTACCTCACCAATAAGAGCGATTGTGTGGACACTGTCTGCTCTGTGGAAGGGGGAATAGTTACCTGGCACCCAGTATCCTCCAACTTTGTCCTTACATGTTTGTGCCAGGGCACCCTACCTGCATTTTCTTCATTTTCTGCTATCTTTTATCATGATGTTGGTTTTTAGCTGAGTAAACAGGTATGCCAGTATTTGAAAGGAAAGACAAACCATGCTGCCTTTTCTGTTGCTTTTCCCAGTAGGAGCAGTGTGAACTCAGATGCTGAGTTCCTACTATTAGAGGAGGAGTGCTGCTTTTCTTTTAGCTAATCATATTTTGGCTATCCCTTATTGATTTCTTCAGATGACTTCTAGACTCATCTGTGCCTTGTGTAGCCTGCCTACAACCTCAACATCCATTCTTAGCCTTTTAGAAGAGGAAGAGGGGATCAGGCGGGTTGTTTTGGATGATTAAGTAAACCATGCTGGTCATACTGCATTTCAGAGCCCCAGGCTTTGTGTCCCTAGCATGAACAAAGCCAGACAGATGACCACTGAGAACTGTAAGTACAGTGCAGGCCAGAGACTGCTTCCCATCCTTTCTTTCCAGGCTCCCCACCAAATGCACCACACATTTCAGTGGCACTGTTGTTTTTGTGAAAATTGGAGCTAGCCTCAAATTTGTGATCCTCTTGCTTATTAGTCTCTTGAGTACTGAGATTTCGGGTGTGGTGACAGTTTTTTTGAAGTTGAAACTTGGATGTCATGGCTGTTCTATATACCATCAACACTGATTTTGTTTGCTCTCATATACAAACTGTCCCAGTCTTGGAGAACTTTTAATTCTCTCAGCACTCAAGATGAAGAGGCAGGCAGGGTCTTTGTGAGTTCAAGGCCAGCCTGGTCCACAGAATAGAGTGAGTTCCAAGAGAGCCAGGGCTACACAGAGAATCCTGTTTCATAAAACCAGAAAGTGGGGGGAGGGAGTGAAGGAGAGGGCGAGGGCGAGCTCAGGCAAGAGAGCTAGCTGGCCATAACACATGCCAGCCTTTAATTCAGTTAAAGTAATTCTCAGTACCCGGGAAGCATTGGTTTTGCTAAACTGATATCAATAGAAATCCTTTCATTTCTTTAGAGCAGCTCAAATTTCTAGTGTCTTCTTTGACATTTCTGTAGAACTTTATCCACTCAGACTTTTCTTTCTTCCTTCCTTCCTTAACACATTTCTTGCTGTTTTTTCCAGCTAGGCCATTCCTACTTGGCTTTCAAGATTTTAAATGATTAAAAGGACACACAATTAGAATTTGATGTGAGGGGAATTAGTATTTTGGGAAAAATACCTATTTAATGAGATGAGAGGAACTGTTTCTCCACTAGAGAGCTGAGCAGGGCAGCAGTAGCAGTAAGCTCCTGAGGAGACAGAACAGGCTCTTAACTGACCTATGGGGGTGGAATACAGATGCACAGCTCCAGGTATTGTGTGCCCTCTCTCTCTCTGATAGATATGGCTGTTGGCTGTAACATTCCACAGTCTGTGTAATGAACGTTTATTTGGTATTGAATACAAAATACATTTTTGAACTATGCATTACTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033624:ENSMUST00000039333:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=PD(25.2=90.2)
A:
NA
C2:
PF086696=GCV_T_C=WD(100=80.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTCAGAAGTCTCCGAAT
R:
CTCTTCCCCACTGTCCTCAGA
Band lengths:
358-1906
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types