HsaINT0122640 @ hg19
Intron Retention
Gene
ENSG00000090857 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:30264]
Coordinates
chr16:70187294-70195184:+
Coord C1 exon
chr16:70187294-70187476
Coord A exon
chr16:70187477-70190377
Coord C2 exon
chr16:70190378-70195184
Length
2901 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
GCGTTTCCTTTCTTTCTTAGGGC
3' ss Score
11.8
Exon sequences
Seq C1 exon
TACGCCCTGCATGTATACAATGAAGTGATGAGTGTTGGCCAGAAATACGGAATCCGGAATGCTGGGTATTACGCTCTTCGCAGTCTCCGAATTGAGAAGTTTTTTGCCTTCTGGGGTCAGGATATAAATAACCTCACCACGCCCCTGGAATGTGGACGAGAGTCTCGGGTGAAATTAGAGAAG
Seq A exon
GTACTGTGTTTACCCAGACTCCACTTTCACTCAGCATCCCGAGTAGTGAATCTGCACTAGACTAGGAAGAAGAACTGATGTGACAGGAAAAGGGGGAAAAGATTGAGGCCTTGATGTTAGCATCAGGTAAATGAGGACAAGAGTGCCCTGAGAATGAAAACTTTATAGGATAAAATATCTTCAAATGAAAACATAATAATGGTGGCTCACGCCTGAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACCCGTCTCTACTAAAAATACAAAAAGTAGGCCGGGCACGGTGGCTCACACCTGTAATCCCAACACTTTGGGAGGCCAAGGCGGGCGGATCACAAGTTCAGGAGATCGAGATCATCCTAGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTTGCGGGCGCCTATAGTCAGGAGAATGGCGTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATTTACAAAAAGTAGCTGGGCGTGGTGGCCAGCACCTGTAGTTCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCTAACAGGCAGAGGTTGCAGTGAGCCAAAATCGCACCACTGCACTCCAGCCTGTGTGACAGGGCAAGACTCCGTCTCAGAAAAAAGAAAACATAGTAAATAGATGACACTTGGTCAGGTGCGGTGGCTCACAACTGTAATCCTAGCACTTTGGGAGGCCAAGGCAGGAGGATCACTTGAGCTCAGCCTGGGCAATACAGCAAGACCTTGTCTCTGAATTACAATTGAAAAACAAACAAAAAAACCCACTTATTTCTAGTGTTCTGCTGTCTAAAAGACTGAGTGCTTTCTGGGAAGCTATTCTGAGTTAATTATGGTGATGCATTAACATGCCACGAATATTTGTACAAACTAGTCGTCCTATAGTCAGCTGCCTAATTTTTGTGGTTTTTTTCTTTTGTTTTTGATTTTGAGGTGGGGTCTCATTCTGTCACCCAGGTTGGAGTGCAGTGGCGCGATGTTGGCTCACTGCAATGCCCTCTCATGCTCAAGTGATCCTCCCACTTCAGCCTCCCAAGTGGCTGGGACCACAGATGCACAACCATGCCCAGCTAATTTTTTTGTATTTTGGTAAAGACAGAGTTTCACCACATTGGCCAGGGTGGTCTCGAACTCCTGAGCTCAGGTGATCCGCCCTCCTCGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGACAGCACACCCGGCCTAATTTTTTTGGTTTTTTTGTTTTGGGCGGATCACCTGAGTTCACAAGTTCGAGACCAGCCCGGCCAACATGGTGAAACCCCGTATCTGCTAAAAATATAAAAATTAGCTGGGCATGGTGGCAGGCACCTGTAATCCCAGCTACTCGGTAGGCTGAGGCAGGAGAATTGCCTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCATACCATTGTACTCCCACCTGGGTGACAGAGCAAGGCTCCATCTCCAAAAAAAAAAAAGGTAATAACCCATTTTGGAAAATATAAAGAAGGAAATTAAAATCACCCATATTTTGTCTATTTAATGGTAGTAACTATTTTTTTTTTCTTTCTTGAGACGGAGTTTCGTTCTTGTTGTCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAATCTCTGCCTCCTGGCTTCAAGCGATTCTCCTGCCTCAGTCTCCCGAGTAGCTGTAAGCCATCCAGCTAATTTTGTATTTTTTGTCTTTACCAAAATACAAAAAATTAGGTGGGTGTGGTGGCGCATCTGTGGGCCCAGCTACTTGGGAGGCTGAAGTGGGAGAATCACTTGAGCATGAGAAGGCATTTTTGTATTTTTTCTTTTTTTAGTAGAGATGGGGTTTCTCCAGGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGAGATCCCCCCGCCTTAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCATAATCACCGTTAATAGTTTATTCTAGTCTTATTTGTTGTACATATGTGTATATATGTGTGTATGCATTGAATATAGATGTGCATGGTCTTGTTGGGATTATATAAAAAAGTCTTTTTTTTTTTTTTTTTGAGACAGAGTTTTGCTGTGTCAACCGAGGCTGGACTGCAGTGGTGCAATCTTGGCTCACTGCAGCCTCTGCCACCCAGGTTCAAACGATTTTCCTGTCTCAGTCTCCCTAGAATTATAGGCACACTCCACCAGAATCTTGGCTCACTGCAGCCTCTGCCTCCCAGGTTCAAGTGATTTTCCTGTCTCAGCCTCCCAAGTAGCTAGAACTATAGGCACACTCCACCACACCCAGCTTATTTTTGTATTTTTAGTAGAGATGAGGTTTGCCTCATCTCTGTTCAAGGCGTGAGCCACCACGACTGGCCAATATAAAAACATTTTTCTAAAGTACTGGACTGATAAGGTATTTTATTAAGTGAGTGAGTTTTCTTCCTAAACGTTTTTGTTCTATCTGGTCTTGTGACTTTATGTTTATAAAATAGGAAACAAAATGCGTACCTCTGTTGTTACAAAAATTACCGCGGCGTCTTTTATATTTCACATGCAGTTTTTCACATGGTAGAAATCGCACAGTTTCCCAAAAGCTGGCAGGGTTGTGGGAGGAGGCGGCTGTGCCCCATTGCAGTGACACCAGGGGACCCTTCCCACGGTGCTGCTCTCTGTGCCGAGGGTCTGAGTGTCGCTGGATGACTCGGCGTTTCCTTTCTTTCTTAG
Seq C2 exon
GGCATGGATTTCATTGGTCGCGACGCCCTCCTGCAGCAGAAGCAGAATGGAGTGTATAAACGCCTCACCATGTTCATCCTGGACGACCATGATTCAGACCTAGACCTTTGGCCTTGGTGGGGAGAGCCCATTTACCGGAATGGGCAGTATGTTGGCAAGACCACCAGCAGTGCCTACAGCTACAGCCTGGAGCGCCACGTTTGCCTGGGCTTTGTGCACAATTTTTCTGAGGACACGGGGGAAGAGCAAGTGGTGACAGCAGATTTCATCAACCGGGGAGAGTATGAGATTGACATCGCGGGATACCGCTTCCAGGCCAAGGCCAAGCTCTACCCTGTCGCCTCCCTCTTCACCCAGAAGCGCCGAAAGGATGACATGGAGCTGAGTGACTTACATGGGAAGTGATGCCACCAGGGCAGCCTCACCTCCTCCCCATCATCTTGTCCTAGAGTGGGCGTCACCTTGGAGCTTCTCTTCCTTCCGCCTCTGTTCCTCTTCTGGAGCCTTTGCCTCCCATCTCTTATCTCCTTGATATAATTTTGAACTTGACCTACTTTAAACTTTTTTGCTCTGCAGCCTTCCTTGCCCTTCCACCTCCTCCTCCTAATATTCACTCTGGGCTCTTCTTCCCTTCCCACCCCTCACTCAGCTTCTCGTGGTGGCAGGAGGTATGTCTGACAGGACAGAAGCAAGCTCCACTGTGGACATGAGTGATGGTGACAGCTGCTTTCAAATTCTGCATCTCAAGGCAGGGCAAGCCGGGGTGGTGCAGGTCTCAGGGCACGAGTCCCTCTCCCTTGGGTTCCATTTTCTTGGAGCAGCCTATTAGTTCTGGTGGGGTTGCCGTGTGTCGGATGCAGCCCTGAGGGGCAGCTCGTGCCTGCAGCCCGGCAGCTCGTTCTCCTGTTCTGCTGTGCTGTGGGCTGGCACTCGATACCTCTGGCAAGAGGATGATTATCTACCTCACTGATAAGAGGCATCGCATGGACGTTCTCTGGTCTGTAGTGGAGACAAGCAGTTAACCTAGCACCATCCTCATCCTCCCTGCAGAAGCCATTAGCAGACCTTTGGGCCAGGGCAGCCTCCCTATAATTTTCTTCATCTCTTGCTAATCTCTATAATAAGGTTGCTTTTTCTTTCTTAGTTGAGTAAACAAGTAAGCCACAGTGTTTGAAAGGGAAAAACCATATTGCCTTGTGTGTTGCTTTTCCCAGTCAAAAGGGTCTGACCTTAGAAAGTCCCCACCAGTGATGCTGAGTGTTCTGCTATGGAAACAATGCTGCTTTTCTCTCAGCTGTCCAAAGTTCAGCCGTTCCTCCTTCCCCTTCTCCCAGTGCGTTTGACTTTGTCAGGTCAGCCTCACTTGTCCCTTTCACAGTTGGCCCATAAAGTCATGTTTCTCTCCCTTTAGAATAGGGAGGGGAAGGGATCAGGTGTGTTGTCCTGGGCCTTTCAACCTTGCGGGCTGTGCTGAGTTCCAGAGAGCTGCCGGAATTCCAGGTTTGACTCTCCAGCACAGAGCAGAGCTACACAGAGGTGACCCACGTTAGTCCACTGAGAGTTCTGAGTCCAAAGGGTGTACGTTGCATAAGGCTAGAGACCGCTTTTCCTCCTTTCCCCCCAGGCTCTTTGTTTCCCTCCACCCACCCTTCCATATCCTCTGGAGCAGGAGACAATGTGGGTGCCCAGAAGTGCCCTGCGCTTTCAGGCAGTGTCTCTGTTTTCCCAAGGTGAAACTTAGATATCATGGACTGTTGTCCAGCCTCAATGCTTCATTTTCCCCTTGCATATCAACTGCCCTAATCTGACTTTTTTTAAGTGCAAATAAACTGCTATAAGACATTTTGGTTAGTAAAACTCTAGCCTTTGGCGTGTTGGTATCTTGGAAGCATTAGCTCTGATAGGTCTATAAGTGTATTAAGGGACATCCTTCCATTTCATTAGAGCAGCTTAAAATGCTCAGGTGTCTGCCTTCTCTGGTGTTTCTTTGGGATCTCTGTTTACCCACTTACGCTGGCTCCTTCTAGACATTTCTTGCCACTTCCCCAACTAGACCACTCCTAGTGATTACTGACTTTAGTGCCTAAACCTTTTTGGAAGGTTCTGGTTGGCTTGTTAGAGGAGCATATGATTAGAATTCTGTTTGGGGGTCTAGTTGTCTTGGAGCAAGTATGTACTTAACTAGCCGAGAGATGCTGCCTCTAGGCAGAGAGGAGGAGAGGTGTTGCCGGCTGGAGGGCCAACCAGTGAACACCAGCTGTGAAGGCCTTGGGAGAGGAGGAACAGGCCCTTGGGCAGATGCAGGCATTACCAGCAGGGAGCAGACTTACCTCCGAAGATGGAGACAGGTGACTGAGAGCTGCAGGCCTCCTCTGCTCTTCCAAACACGTAGCATTTGCACCCCTCCAAAGCCATCTTTGTAAAGGAAAACGTATTTGTAATTGAATCCAGAAGAATTTAGTTACACATAGACATAACTCTTCAACCTTAACTATGGCAATACATTTGTGCTTTAACTGTTACATAGCAGTATCACCACTTACCAGGATCCAAATCGAAATAATAAAAGCTGTCTCCATAGTTTAAAATCGAATAGTGCCATCATCACAGTATATTAGTCAAATAGAAGCTTCATCAGAAATGTATCCCACATAGAGTTTTAAGACTTGGATTCTCTTCTGCCCTTGTTAATCTCCAACTAATTACTACAGATTGACACGTTTTTAATTAGCTGTCCTTTGTAAGAAGTCAGGAAATCTGATGCTGTGTCCAAAATTATGCACTGTTTGTTGAAGTAGAACCAGAAATCCTGACCTCCTGTTAAATGACATCAGTTTCCCCCTCTGAGCAACAGACTGCTTGTCTTGCTAGGAGAGGAGGATGGGGGGCTGAGCACTCAGGCTGTCCATTGAAACCCCTTGTCCATGAATAGGGTCATACTCCTAAGACTGATGGGGTGTTGATCTTCTAGGACATCACTTGTTTATTCAGTGCCCCAAACACAGATTTCTCTTCTAGCACTTTAGAGTTGATCCTTGAAGTCTCTCCTGGTTCATTCAAATACAAGCTGTGTGAGTCTGGTGGTTTTCTGTGATTGGTCTAATGTGAGCTCTTTGAACAGACAGATCTGACAGTGAATGACTCTCCCCTGCTTCTGGCATAACTGCTTTGCCTCTGTCTAGTGTCCAAGCATCTTAGCTGTTCAAGAGGAGAGGGCAGCATAACTTCCTGACCACCGGTGTCAGATATCAGAGCATTCTGGACTCCTGAGAGGCAGTGGCCTCTTGAGTGAACAGGGGAGGCCAGTAGATGCCCCAGATCCAGAGCCGTGGCTGCAAATCCAGCAGGAATAAGGAGGGACAACCACAGCCTCCTCATCCATGTGTCATTTCCAAGGGTTTGCCTTGTGTCTCAGCTCATTCTGGGCAGCACGTTTGTCTTCTGTCCCTAGAGATTTGAAGGATTTTGGACTCTTGTGAATGGGTGACTGGACTTGGCTTTACAGAGTTGGGTGCTTTTTTCTCTCTGCAATTACCTGTCATAGCATTTTGTGCTCACCACGAAGGATGGTCTCTGCCTTCTCTTGTCGGTGTATGCCATCTGAACCTAGGAACACAAAGTATATTGGCCTCAAACGGAGACCCAGGGTTGCCAGTTTTCCGTGGGCCTTCCCCTCCCTTGAAATGTCTTTAATTACCTCCCCTTCATCGTCAGGCCACGTGTGACTTCTGTTCTTAGCACTGCCAGGGTCATTGACTTCCATCTAAGCTTGCATCAGGAAGATGTTCCTTCTGTGATCATTGGTACTGAAGCCAGAAAAGCTCTCATTCAGGAACTCTGAAGAGCAAAAAGGGACAAACACTAACTGCTGAGCTGGGCCATTTGATCTCCTTTCACCTTGCATTGCTGTCACAGCACCTTGTATGATGGCAGGACAGGCTCCAGCAGAGAGAACTGCACAGTGACCACTGTATTTTTCACGCTCTTCCAGGGATCCCTGTCCCCCGACATTGAAGAGATCTCATTCAGGCCAGAGACACAGAGACCACATAGCCCAGTGATTAAACCCCGGTTTCACTCTGGCCCCAGGAGTGGAGCCTGGCCACTCCTGTTTGGTTCTCACTGGGAGGCCCACTGGCCTTGGATCATCTCCTCATGCACACCCGGAGTTTTACCTGCTTGCTTGCTTTCCTGGACTGCTGTTTGCAAGAAAGTAACTAAAACATGAAAAGTAAACCTCCAGCTTCCACAGTATATTACCTGCCGTTGCATGCATTTGAAAGTTAGCCTCCTCCCTTGCCACCGTCTTGGTGGCAGTAGCGATGCAAGAATGATGGGAGCTTTCCGAGAGCGTTCAGTGTTTCACTGAAGACAGGACCCATAGCCTTCATTTCTGGCTCTGTGTCTCCTCTGGCATATGGACACATTTCCTGGCATTTGCCTGAGTCTACACCACTTTTTGAGAACCTGAAATAGAAGGGAATCTTCTGTGGCCCACAGTCTCCATATTGGCACTAGAAGACTGGCCTGGCGGAGGAATTTGCGTTGGCTTGCTTTCAGGGGTTAGCTACAAGATTCAGCTTTATATCTCTGTTGCTTCTTGGCCAGTGTAGTCAATAAGGGTCTTCTTTAACATCTAAGATAGAGGTTTGGTTGGCCGGGCGTGGTCGCTTACTCCTGTAATCCCAGCACTTTGGGAGGCCCAGTGAGGTGGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCTGAGATTGCACCACTGCACTCCAGCCTGGGTAACAGAGTGAGACTCTTGTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090857-PDPR:NM_017990:18
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=PD(24.9=88.5)
A:
NA
C2:
PF086696=GCV_T_C=WD(100=80.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)