MmuINT0003809 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr8:113656777-113659044:+
Coord C1 exon
chr8:113656777-113656959
Coord A exon
chr8:113656960-113658507
Coord C2 exon
chr8:113658508-113659044
Length
1548 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
TTTTCCCTTTTTTCTCCTAGGGC
3' ss Score
11.78
Exon sequences
Seq C1 exon
TACGCTCTGCATGTCTACAATGAGGTGATGAGTGTTGGACAGAAATATGGAATCCGGAATGCTGGGTATTATGCCCTCAGAAGTCTCCGAATTGAGAAGTTTTTTGCTTTCTGGGGTCAGGACTTAAACACCCTTACCACGCCTTTGGAATGTGGAGGAGAATCTCGAGTGAAGTTAGAGAAG
Seq A exon
GTATTATTTATCTACATCTCTCTGTGCCTCTCAGCCAAACAGTTGTGATGTGTCTAAGATAGGAAGAGCTGAACAAATAAAGAAGAGCAGGAAAGATAGGGAGGTGCTAGCTAGCAGCAGGTAAGTCATGAGGAATAGTGTGTCCTCAGGGCAGGACACTTACCTGTGGGATGCACATTTCAGATAAAATCCCAACACCTGGTTACATTGACATACATTTTTTAGTCAATTGTGGTCACAAATAATATTGTGAATGTACCACAGTATTCATCTAAATTAGTCATCTTACAGCCAGCTGCCTAATTTTCTCTTAAAATATATTTTTAACTTTTAATTATGTGAATGCATGTATGTCTGCATGAGGTGTATTTGAATGCAGTTGCCAAAAGAGGCCACTGGGAACAGAACTTGGGTCCTCTACAACTCTTGTCTCTCCAGCCCCAGGTCTTTTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCGATCATTACGGATGGTTGTGAGCCACCATATGGTTGCTGGGATTTGAACTCCGGACCTTTGGAAGAGCAGTCGGGTACTCTTACCCACTGAGCCATCTCACCAGCCCCCAGGTCTTATTATTTAGAGAAGTATAGTTCAAAAGGTTAGTCTACTGTCTTCCACCTCTGAACCTCACCCGGTGTCTTCTCAGAAGCAGCAGTTGGTTTCTATTCTAGAGTGTTAGAATGGGCAAGTATGCCAGTGTGTGTTCCCCTGCCCACTTCCAATCTAGATCGTGTTAAACTTGCTTTACTTACTACAGTGTATTTAGGCAGTGCCCTAACAGTACACCTGTAGACAAGGTCCTGCTATGTAGTCCTGGCTGACCTGGAAATTTCTGTGTAGACCAGGCTGTGTCTCATCATGCCCAGATAGTACTCACTTATTCATTTATTTACTTACTAATTTTGGCCACTGCATATAACTAGACATAAAGAAATTATACATAATTTTTTGTGTGCTGTGAAAATGCTAACTTGCTTAAAATGACCTGTATTCTAATTATAGAGATAATCACTATTAAGTTTGTTTACCTGTATATATAAGTATATTGGTACATACATATGCAGGGGCTTCTTGCTGGAAATACACAAAGGTTACATACCTCTAACTCTGTGGAATTGGTTCTTTGCTGCCAACTTTCCTTGGGTTTTGGTGCTCAAACTCCAGTTTCTAGGCTTGTGTGATAACAGCCTTTACCTGCTGAACCATCCTGCCATCCCTCTATCAAGTATTCTTGATTAACTTTTCAGTTTTTCTAACATTCTTTGTTACTAGGCCCGTGATTGAAATCTGTTCACAGAAGTATGTACTTCAGCTGTGTCTCTGCTGTGTACAAAGCTTTTCATAATGCCTTCCTCAAACATCATTTTCTAAAAGCTAGCAGGAATGTAGTCTAGATGTACCCTCTACTTTTACATGCCAAGGGCCATCTTATAGACTGGTATCTCAGGGATTTTTTCCCTTTTTTCTCCTAG
Seq C2 exon
GGCATAGACTTCATTGGTCGGGATGCCCTGCTGCAGCAGAAGCAGACCGGGGTATATAAGCGCCTTGCTATGTTCATTCTGGACGACCATGACACAGACCTTGATTTGTGGCCTTGGTGGGGAGAACCCATTTACCGGAACGGAAAGTATGCTGGCAAGACCACCAGTAGTGCCTATAGCTACACACTGGAGCGCCATGTATGCCTGGGTTATGTACACAATTTTTCTGAGGACAGTGGGGAAGAGCAGGTGGTGACAACAGATTTCATCAACCGAGGAGAATATGAAATTGACATTGCAGGACATCGGTTTCAGGCCAAGGCCAAGCTCTACCCTGTCACCTCTTTTTTCACTCACAAGCGTAGAAAGGACGATGTGGAGCTGAGCGACTTTCATGGGAAGTAACGCAAGACACTCCCTTCCCACATTCTTGCCATGAGGAGCATCGTTCTCAGAGCCGAGTTTCCCTCCGTCCTGGTCTCCTCACTGAAGGTACCTTTGTCCTTGCCTAGGTTCAATTTGACCTAAACTTTTTCC
VastDB Features
Vast-tools module Information
Secondary ID
-4930402E16Rik:NM_198308:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTCAGAAGTCTCCGAAT
R:
CTCTTCCCCACTGTCCTCAGA
Band lengths:
358-1906
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: