RnoINT0109332 @ rn6
Intron Retention
Gene
ENSRNOG00000022593 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:RGD Symbol;Acc:1308307]
Coordinates
chr19:43109427-43111686:-
Coord C1 exon
chr19:43111504-43111686
Coord A exon
chr19:43110031-43111503
Coord C2 exon
chr19:43109427-43110030
Length
1473 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
CTCCCCTTTTCCTTTCCTAGGGC
3' ss Score
12.29
Exon sequences
Seq C1 exon
TATGCTCTGCATGTCTACAATGAGGTGATGAGTGTTGGACAGAAATATGGAATCCGGAATGCTGGGTATTACGCTCTCAGAAGTCTCCGAATTGAGAAGTTTTTTGCTTTCTGGGGTCAGGACTTAAACACCCTCACCACGCCCCTGGAATGTGGAGGAGAGTCTCGCGTGAAGTTAGAGAAG
Seq A exon
GTATTTATCCATCCAGATCTCCATGTGTCTTAGCCAAGCATCTGTGATGTGTCTAAGAATAGGAGGAGCTGAACAAACCAGGAAAGACAGGGAAGTGCTGGCCAGCATCAGGTAAGGCACAAGGACAGGTGTGTCCTCAGGACAGGAGACTGACCGTGGGATGCACATTTGAGACGGAATCCCAATACCCTGACAACACCTGCGTTACAGTTTTTAGTCGACTGTGGTCACAACTAACATTGTGGAGGCAGCACAGCATTTTTCCAGATTAATCCTCTCACAGCCAGTTGCCTCATTTTTTCTTAAAATATATTTTTAACTTTCAATTATGTGACTGCATGTATGTCTGCATGAGGTATATGCATCTGAATGCAGTTGTCAAGAGGCCACTAGGAACAGAGCTTGGGGTCCTCTACAAGAATCCTTATTTCTCCAGCCCCAGGTAGTATTTAGAAACTGTAGTTCAAAAGGTTATTCTCCAGTCTTCCTTTCTCTGAACCTCAACCAGTGTCCTCTGAGAAGCAGCAGTTTGTTCCTGTCCTAGAGAATTAGAATGTGCCAGTGCCAGTGCATGATCGCCCTGCCCACTTTCAATCTACATGGGGCTAAACTTGCACCTTGTTGTGTTTACAACAGCACTTCCCTGACGTACAACTGTAGTGTCTCTGTTCTTTTCTGAGACAAGGTCTTGCTATTTAGTCCTGGCTGTGTGCCCTCATGCCAAGATAGTACTTATTTAGTCATTCTTACTTTTGGCCACTGCATATAACTAGACATAAAAAATTACACACAACTCTTTTGTGTGCTGTGAAAATGTTAACTTATTTAAAATGACCTGTCTTTTAATTAGAGATAATCACTACTACGTTTGTTTACCTGTATATATAATAAATATATTGGGACATTCATGTGCAGGACTTTTTGTTGGAAATACACAAAGGTTACCTACCTCTAACTCTGTGGAATTGGTTCTTTGCTGCCAACTTTACTTGGGTTCTGGGGCTCAAACTTGGGTTTCTAGGCTTGTGTAATAAGAGCCTTTACCTGCAGAGCCATCTTGCCATCCCTCTAGCAAGTATTCTCAACTAACTTTTCAGTTTTTCTAACAGTCTTTGTTCTGTGTAGGCTCATGGTTGAAATCTTTTCACAGAACTATGTATGTACTTCTGCTGTTAAAATTCTTTGGTGTCTGCAGTGTGCACAGCTTTTCACAGTGCCGCCATTTTCTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCAATGTGCCGCCATTTTCTAAAAGCTAGCAGTGGTGTAGTCAAACGTGTGCTGCGTACCCTGTAGTCTCCCTTACACGCCAGGGCTGCCTTCTAGACTGGCCTCTCAGGGTCTTCTCCCCTTTTCCTTTCCTAG
Seq C2 exon
GGCATAGACTTCATCGGTCGGGATGCCCTGCTGCAGCAAAAGCAGACCGGGGTATATAAACGCCTCGTTATGTTTATTCTGGATGACCATGACACAGACCTGGACTTGTGGCCTTGGTGGGGAGAACCCATTTACCGGAACGGAAAGTACGCTGGCAAGACCACCAGCAGTGCCTACAGCTACACTCTTGAGCGCCATGTATGCCTGGGCTATGTACACAACTTTTCTGAGGACAGCGGGGAAGAGCAGGTGGTGACAGCAGATTTCATCAACCGAGGAGAATATGAGATTGACATTGCAGGACATCGGTTTCAGGCCAAGGCCAAGCTCTACCCCGTCACCTCTTTTTTCACTCACAAGCGTAGAAAGGATGACGTGGAGCTGAGTGACTTTCATGGGAAGTAATGCAAGACTTTTTCCCTTCCTCCCATCCTCTCACCATGAGGAGCATCGTTCTGGGAGCTGACCTTTCCTCTGTCCCTGTCTCCTCACTGAAGAAGGTACTTTGTCCTCTCCTAGTTTTTCTGTTTGACCTAAACCCTTTTCCTTGAAAGCCTGTCTTCCCATTTTCGCTCATTTGCTGTTACCCCTCCTAATAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022593:ENSRNOT00000038452:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=PD(25.2=90.2)
A:
NA
C2:
PF086696=GCV_T_C=WD(100=80.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGAATGTGGAGGAGAGT
R:
CCTGAAACCGATGTCCTGCAA
Band lengths:
357-1830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]