MmuINT1002885 @ mm10
Intron Retention
Gene
ENSMUSG00000084808 | 9430091E24Rik
Description
RIKEN cDNA 9430091E24 gene [Source:MGI Symbol;Acc:MGI:1924618]
Coordinates
chr8:111128886-111137552:-
Coord C1 exon
chr8:111137443-111137552
Coord A exon
chr8:111129787-111137442
Coord C2 exon
chr8:111128886-111129786
Length
7656 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TGAAAACTTCTTCCCTGCAGCCT
3' ss Score
8.1
Exon sequences
Seq C1 exon
GAGACCTGTGAAAGGGTCAGGGGTTGCTCTAGAGCTACCATTTCTGCTAACAACTTGCATCTACTCCTGAGAAGCCCAGCTCTACCACACTGGTGGATCAGATATTCTAG
Seq A exon
GTAAGCAGCCCCCTCGACTATCTAAGGTACTTGTGCCATCAAGCATAGAAAAAACTGCAGCAAGACAAGCACGGTGTGTAAGCTCTGCTGATGGCAGCATCGGCCAGAACTTCTAGCTGAAAACTTACTAGGAAGCTGCTGTTTCCCTCCAACTTAATAGTTAATTAGCTAGTGATTAACAAGTGCAGAAGAAAATAAAAAACTGCTGAAAATACTCTTGATGACATTTGTTTCTGAATAATATACTGTGATGGTGGTATACCCAATTGTAAACTATATTGGTTTGGAAGTTTTTCTGATTTGGAACTTAAGTACTAACTTCCATATTTAAAGAGCAAACCTGCTGATTGCTACTTTTTTTTTTTTTTACAAGTAATGCATAGTTCAAAAATGTATTTTGTATTCAATACCAAATAAACGTTCATTACACAGACTGTGGAATGTTACAGCCAACAGCCATATCTATCAGAGAGAGAGAGGGCACACAATACCTGGAGCTGTGCATCTGTATTCCACCCCCATAGGTCAGTTAAGAGCCTGTTCTGTCTCCTCAGGAGCTTACTGCTACTGCTGCCCTGCTCAGCTCTCTAGTGGAGAAACAGTTCCTCTCATCTCATTAAATAGGTATTTTTCCCAAAATACTAATTCCCCTCACATCAAATTCTAATTGTGTGTCCTTTTAATCATTTAAAATCTTGAAAGCCAAGTAGGAATGGCCTAGCTGGAAAAAACAGCAAGAAATGTGTTAAGGAAGGAAGGAAGAAAGAAAAGTCTGAGTGGATAAAGTTCTACAGAAATGTCAAAGAAGACACTAGAAATTTGAGCTGCTCTAAAGAAATGAAAGGATTTCTATTGATATCAGTTTAGCAAAACCAATGCTTCCCGGGTACTGAGAATTACTTTAACTGAATTAAAGGCTGGCATGTGTTATGGCCAGCTAGCTCTCTTGCCTGAGCTCGCCCTCGCCCTCTCCTTCACTCCCTCCCCCCACTTTCTGGTTTTATGAAACAGGATTCTCTGTGTAGCCCTGGCTCTCTTGGAACTCACTCTATTCTGTGGACCAGGCTGGCCTTGAACTCACAAAGACCCTGCCTGCCTCTTCATCTTGAGTGCTGAGAGAATTAAAAGTTCTCCAAGACTGGGACAGTTTGTATATGAGAGCAAACAAAATCAGTGTTGATGGTATATAGAACAGCCATGACATCCAAGTTTCAACTTCAAAAAAACTGTCACCACACCCGAAATCTCAGTACTCAAGAGACTAATAAGCAAGAGGATCACAAATTTGAGGCTAGCTCCAATTTTCACAAAAACAACAGTGCCACTGAAATGTGTGGTGCATTTGGTGGGGAGCCTGGAAAGAAAGGATGGGAAGCAGTCTCTGGCCTGCACTGTACTTACAGTTCTCAGTGGTCATCTGTCTGGCTTTGTTCATGCTAGGGACACAAAGCCTGGGGCTCTGAAATGCAGTATGACCAGCATGGTTTACTTAATCATCCAAAACAACCCGCCTGATCCCCTCTTCCTCTTCTAAAAGGCTAAGAATGGATGTTGAGGTTGTAGGCAGGCTACACAAGGCACAGATGAGTCTAGAAGTCATCTGAAGAAATCAATAAGGGATAGCCAAAATATGATTAGCTAAAAGAAAAGCAGCACTCCTCCTCTAATAGTAGGAACTCAGCATCTGAGTTCACACTGCTCCTACTGGGAAAAGCAACAGAAAAGGCAGCATGGTTTGTCTTTCCTTTCAAATACTGGCATACCTGTTTACTCAGCTAAAAACCAACATCATGATAAAAGATAGCAGAAAATGAAGAAAATGCAGGTAGGGTGCCCTGGCACAAACATGTAAGGACAAAGTTGGAGGATACTGGGTGCCAGGTAACTATTCCCCCTTCCACAGAGCAGACAGTGTCCACACAATCGCTCTTATTGGTGAGGTAGATGGTTACGAGGTATCAGGTGGCAACCTCAGCACAGTGGAACAGAATTATCTGCCTGGTTAAGACACAAGTTATTCCCAGGGCTGCATCAGACACAAAATCATCTACCGAAACTAGGAGGTTACTTGGTAAGAATCTAAGCCGAAGGGAAATGGATATTTACCCTAAGACTTAAATAATACCAACTTGCCTAACACTGAATTTAAAATCAGTCTGTCACCCTAATACCACTCCACAAGTGGGTTCTGCCCGCCATTGTGGGTATGTGAGCCTGCTGGAGGGATGAGAAGAGCCTGGATTATTAGGAGGGGTAACAGCAAATGGGAGAAAATGGGAAGACAAGAAAGGTTTTCAAGGAAAAAGTTTAGGTCAAATTGAACCTAGGCAAGGACAAAGGTACCTTCAGTGAGGAGACCAGGACGGAGGGAAACTCGGCTCTGAGAACGATGCTCCTCATGGCAAGAATGTGGGAAGGGAGTGTCTTGCGTTACTTCCCATGAAAGTCGCTCAGCTCCACATCGTCCTTTCTACGCTTGTGAGTGAAAAAAGAGGTGACAGGGTAGAGCTTGGCCTTGGCCTGAAACCGATGTCCTGCAATGTCAATTTCATATTCTCCTCGGTTGATGAAATCTGTTGTCACCACCTGCTCTTCCCCACTGTCCTCAGAAAAATTGTGTACATAACCCAGGCATACATGGCGCTCCAGTGTGTAGCTATAGGCACTACTGGTGGTCTTGCCAGCATACTTTCCGTTCCGGTAAATGGGTTCTCCCCACCAAGGCCACAAATCAAGGTCTGTGTCATGGTCGTCCAGAATGAACATAGCAAGGCGCTTATATACCCCGGTCTGCTTCTGCTGCAGCAGGGCATCCCGACCAATGAAGTCTATGCCCTAGGAGAAAAAAGGGAAAAAATCCCTGAGATACCAGTCTATAAGATGGCCCTTGGCATGTAAAAGTAGAGGGTACATCTAGACTACATTCCTGCTAGCTTTTAGAAAATGATGTTTGAGGAAGGCATTATGAAAAGCTTTGTACACAGCAGAGACACAGCTGAAGTACATACTTCTGTGAACAGATTTCAATCACGGGCCTAGTAACAAAGAATGTTAGAAAAACTGAAAAGTTAATCAAGAATACTTGATAGAGGGATGGCAGGATGGTTCAGCAGGTAAAGGCTGTTATCACACAAGCCTAGAAACTGGAGTTTGAGCACCAAAACCCAAGGAAAGTTGGCAGCAAAGAACCAATTCCACAGAGTTAGAGGTATGTAACCTTTGTGTATTTCCAGCAAGAAGCCCCTGCATATGTATGTACCAATATACTTATATATACAGGTAAACAAACTTAATAGTGATTATCTCTATAATTAGAATACAGGTCATTTTAAGCAAGTTAGCATTTTCACAGCACACAAAAAATTATGTATAATTTCTTTATGTCTAGTTATATGCAGTGGCCAAAATTAGTAAGTAAATAAATGAATAAGTGAGTACTATCTGGGCATGATGAGACACAGCCTGGTCTACACAGAAATTTCCAGGTCAGCCAGGACTACATAGCAGGACCTTGTCTACAGGTGTACTGTTAGGGCACTGCCTAAATACACTGTAGTAAGTAAAGCAAGTTTAACACGATCTAGATTGGAAGTGGGCAGGGGAACACACACTGGCATACTTGCCCATTCTAACACTCTAGAATAGAAACCAACTGCTGCTTCTGAGAAGACACCGGGTGAGGTTCAGAGGTGGAAGACAGTAGACTAACCTTTTGAACTATACTTCTCTAAATAATAAGACCTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGTACCCGACTGCTCTTCCAAAGGTCCGGAGTTCAAATCCCAGCAACCATATGGTGGCTCACAACCATCCGTAATGATCGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAAAGACCTGGGGCTGGAGAGACAAGAGTTGTAGAGGACCCAAGTTCTGTTCCCAGTGGCCTCTTTTGGCAACTGCATTCAAATACACCTCATGCAGACATACATGCATTCACATAATTAAAAGTTAAAAATATATTTTAAGAGAAAATTAGGCAGCTGGCTGTAAGATGACTAATTTAGATGAATACTGTGGTACATTCACAATATTATTTGTGACCACAATTGACTAAAAAATGTATGTCAATGTAACCAGGTGTTGGGATTTTATCTGAAATGTGCATCCCACAGGTAAGTGTCCTGCCCTGAGGACACACTATTCCTCATGACTTACCTGCTGCTAGCTAGCACCTCCCTATCTTTCCTGCTCTTCTTTATTTGTTCAGCTCTTCCTATCTTAGACACATCACAACTGTTTGGCTGAGAGGCACAGAGAGATGTAGATAAATAATACCTTCTCTAACTTCACTCGAGATTCTCCTCCACATTCCAAAGGCGTGGTAAGGGTGTTTAAGTCCTGACCCCAGAAAGCAAAAAACTTCTCAATTCGGAGACTTCTGAGGGCATAATACCCAGCATTCCGGATTCCATATTTCTGTCCAACACTCATCACCTCATTGTAGACATGCAGAGCGTACTATATGGAGAGAAGAAAAGTTAGCAACTAGTGAGCTTTCTAGTTGGCTGAAGTGGTGTATCCCTTTGGTTCTTAGGTCGGCTGCAGGAAAAGGATTTTATCATTTTTAACAGTTAATTTTGAATGGATATATTCACATTTTTAAAAAAGATTTATTGATTTTATGTATGTGATTACATTGTAGCTGTCTTCAGACACACCAGAAAAGGGCATCAGATCCCATTTCAGATGGTTGTGAGCAACCATATCGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGGAGTCAGTGCTCTTAACTGCTGGGCCATCTCTCTCCAGCCAAACATAATCACATTTTAAAAACCACCTTAAAGCTGCTGAAGACATGCAGCTCAGTTGGTAGACAGACATCTTCCTAGCAATCACAAAGCTCAGAGGTATACTCACTTGCCCAGCGTGCCTGTGACTCTTGGTTCAGTTCTGTAATACACATGCAAAAACCTCATACCATGTATCACATGACAACCTAGAAAAATGCATCATGCATGGGAGAGATGGGTCACTTGCTGTTCTTTGCAGAGATCCTGGGTTCAATTCCCAGCATTAACATGGCAGCTCACAATAGTTTAACTATCCCATCTTTAATTCTAATTGCAGGGGATCCAATGCCCTTTTCTGACTCCCATGGCCACTGCACCCATGTGGTACAAAGGGATACATGCAGGCAAAACACCCATACATATAAAAATAGTATGTTCAAAGTATTTAAAGTATCTAGAAATATAAATTAATGTCTCTGCATCTTTACTATGGATGCAATGAAACTAGTTACAATTCTGCCACAATAACTTACTGTGCACTGGACAATACTCAAACTGAACCAAAATAAGCCCCACCTTTAAAAAATGTGTGTGTGGCTGGAGAGAAATGAAAAACTAAATTGATGAAGATCAGGTTCAGTAGTTGAAGTATTTGTACCCTATGTAAGGACTTGAGTTTGATCCTGGACCCCACAAAGAGAGGAACCAACTCTAAAAATTTACCCTTTGACCTCCATGCATGTACCATGATAGGTATGCCCTGACATACAGACACTACATAAACTAAAAAACTAAGAGTGTAGGTGATATGGGAGGAAGCCTTGGTAATGTGGAAGCAGTTCCAGGTTGATGCAAGAATGGAGAGTAGGAGGCCAGTGTGGGCCAGGCCTGGTCCTGGGGCATGGGAAGGAGCATGGTCAAAGGAAAGCATGTGACCAAAAACGCCAGGGAACATCTACTCTGACTTACTCTGTGACACCGATTTCTTTATGTGATAAGATATAAAATCCTTACAGGGAACTCTCAGGAGTACACAGTAATGTTATTAGGTAGTGGTAAGTGCTACAGAAAAAAGGGGTAAAAAAGAGGTAAGAGGACAGATAGCTTTAAAAAAGGTCTCACTAAGAAGTGATGTGGCTGGACATGGTGCCACACTTTTAATCCCAGGACTCAGAAGGCAGAGGCACTGGATCTCTTAAATTGAAGGCCAGCTTGGTCTACATAGTGAGTTCCAGGACAGCTAGAGCTATATTCTGAAACTCTGTCTCAAAACATTACAAACTGTAATATGAATGCTGGAGAGATGGCCCAGCAGTTAAGAGCACTTGCTCAGGCTTGGCTCCCAAGCACATCATTAGTTCGCCACCACCTGTCACTCCACTTCCAGGAATTTCACACCTCTCCTGGTCTCCTCAGTGCAGCGCAACATGTGTACCATATATAGATGTACTAAATCATATACATATAGGTGTGCATGTGTGTGCTGGGTGGGGGAGGTAATATGAGGCCTGAAAGGGAACAGTAGTGGCTTGCGGTGCCAGAAGGAAAACAAAGCATTAGGACACAGAGCAGCAGCCTGTCTAGCCTGTTCCACCTAGCAGGAATGCATGCTCCAGGAAACTCTGGCCAAGTTCAGAGGCAAGAAGAATAGACTGCCAGCTCTGTGGAGTGGCTTTCAGTAGTACTCTGCCTCATTCATAAATTACACTTGACTGACATGCCAGGTATGGTGAGACACATATAATCCTAGCTTTCAAGAGGTAGAGAACAGCCTGGGCTAGAATACTGAGAATCCCAAGACCAATTTAAAAAACAAAAACAAAACAGCACTTGCAGGGAACTCTCAGGGAACTTCTTAGTGAGACCTTTTTTAAAGCTATCTGTCCTCTTACCTCTCTTTGTACTTTACCCCTTTTTTCTGTAGCACTTACCACTACCTAATAACATTACTGTGTACTCCTGAGAGTTCCCTGTAAGGCAGACAGATCTCTGAATTCAAAGCCAGCCTGTTATACAGAGTAAGTTTAAAGATAGCCAGGGCTACACAAAAAAACCCTGTCTCTAAGAACAACAACAACAAAACAAACAAACATGTAATCCCAAAGGTACTACTAAGTACTACCCCCCTTCCCTGTCTTTGAATTTACTTGCATATACATCAAAATTACTGATTAAATAATGCTACTATATCAGGTTGCTGTTGGCTGAAGGGAACTAATTATGAAGGTGATGCTGAGTCTTATCTACAGAACTGATTTTATTTGACTGGTTGTGAGCCTAGACTTTAACAACTAAGCCATCTCTAGCCCACGGTGTTGATTTTTGAGATTCCTAGAGTCTCATGTATCCCAGACTAGACTGAAACTCCGGCGTCTACCTTCTCAGTGCTAGGATTATGGGCATGTGTTACCATGCCTAGGTAGGTGATAGAGTACTAGGGATCAAACTGAGGACTGACTGACATGCTAGACAAACTGTACACTAAGTGAGCTACATCCCGTCAAGTTTTCATTTTTTTAAGATGCGTAAACATTTTATTTCTATTCTACGTATGTGAGTGTTCTGCCTGTATGCATGTATGGGTACCATGTATGTGCCTGGTACCCTTGGGGGTCAGAAGTAGGCAGTATATCTCCCAGAACTAGAGATAAAGATAGTTGTGAGCTGCCATGTGGGTGTTGAGACAGAACCCAAGTATTCTATGTTCCCTCCCTCAAGTTTTTTTTGAAAATGCATGTATCTCTTTAACAGTAACTATTAAAAATGATGAAAACTTCTTCCCTGCAG
Seq C2 exon
CCTGTCCAAGACTGGATGGGATACACCATTCTAAATCTGTTGGTACTCAGGAATCTTGGGAAACTGGTACCCCTGCCCAGAGCCCTCTCACCTCTATGGGGATATACAGCATGAAGCCTGGCTCTCCCGTGTGCGTCATACTCATCACCCGGATCCCATTTGCATAGCCCACACTCATCTCCTACAAAGAAAAGGAAAGCAGTCAGTACTCGTCCCTCCTGACAGTCAAGAGACTGAGTCCCGAGGGGAGCCTGTCAGTACCCACCCTATGTTAACCCTGGAAGAGCTACAACCAAGGAAAGCATCTCTCTTTACCAGCTCATGCTAAAACATTGAGTTAGCCAAGCAGCGTTAGGAACAATGAAGACCAACCAAGTGTTTTCTCTGGAGGACTCTGTAAGACACATAAAGGACAATGCCTGCAGAATACAATTCATGCACTCTGGGACCAAAAGCTCAGTTTCTAGTGTTACAGCTGCTCAGTCGCCTTGAAAGGGTCACTGATATAATACTGCTCTATGAAGGGAAGTGTAAGGCCAAGCAAGACAGCACTGAAACAATTCCACATGAATTCTGACAAGGCATTTGACAGTCAGGTTGGATCATTTGTAAAGTACAGAGAAGACTGTAGAGGGATCTGTTCACCAACATGGAAGTTTTCTGTTGTTTTCTCTGCTTGGGAGAGCAGGAAATCATTAAACAATCTGCTCTAAAAATCTCCACTTGGGTTTAAACTTCCAAGTTTCTCCATGCATGGTGCATGTCCAAAGTGGCTGTGTGACTGCTTCCTGCAAAGCGCTCAGTTATTCAGTGTAGTGTGTGCCAAGCAACTAGTTGTGTGTTGTCTAGGGTTCAGCTATCAATATACTATGAGAATAAAAACAAAACAGCAAATGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000084808:ENSMUST00000127301:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types