MmuEX0002513 @ mm10
Exon Skipping
Gene
ENSMUSG00000035279 | Ssc5d
Description
scavenger receptor cysteine rich family, 5 domains [Source:MGI Symbol;Acc:MGI:3606211]
Coordinates
chr7:4926490-4927665:+
Coord C1 exon
chr7:4926490-4926516
Coord A exon
chr7:4926974-4927282
Coord C2 exon
chr7:4927552-4927665
Length
309 bp
Sequences
Splice sites
3' ss Seq
GCTTTTCCTTCATCCCTCAGAGC
3' ss Score
10.4
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
CAATGCTGGTGGGGATCCAGGCTATAG
Seq A exon
AGCGACTCCGCCTGGCTGATGGTCCTCATGGCTGCGCAGGACGCCTGGAGGTCTGGCACAGCGGGCGCTGGGGCACCGTGTGTGATGACGGATGGGACCTTCGGGATGCTGAAGTGGCCTGCCGTGTGTTAGGCTGCGGAGGGGCGCTGGCAGCCCCTGGGGGTGCCTTCTTCGGGGAGGGCACTGGGCCTGTATGGCTCAGTGAACTGAACTGTCGGGGCAATGAGGGTCAGCTGGGTATCTGTCCCCACCGGGGCTGGAAGGCCCATATCTGCTCTCATGAGGAGGACGCAGGCGTCGTCTGTGTAG
Seq C2 exon
GTCAGCGTGCAGCTAACTCTAGAGAAGATTCAATGTCCCTGCTGGATGGGGATCCATGGCTGGCACTGTCTGGGGAGCTAAGCCCCAGCTCAGAGGAGCCCCCTATAACTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035279_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=94.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types