MmuEX0002602 @ mm9
Exon Skipping
Gene
ENSMUSG00000058093 | AA987161
Description
expressed sequence AA987161 [Source:MGI Symbol;Acc:MGI:2145180]
Coordinates
chr13:67696153-67710644:-
Coord C1 exon
chr13:67710510-67710644
Coord A exon
chr13:67697586-67697712
Coord C2 exon
chr13:67696153-67696248
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTGTTTTTTAGGAA
3' ss Score
12.57
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GGGAAATGTAGTCCCGGGTCCTGTGACATCATCAGAAAGGGCCGCCGGAATCGAACTTCCTTATTCTTCAAACTTCACTCCTCAAATGTGTGCAGTTGTCCTCCTCAGCGCTGCATCTGGATTTCTGACATGGAG
Seq A exon
GAAATGCTGTCATTCAAGGATGTGGCCATTGATTTCTCTGCAGAGGAGAGGGAATGCCTTGATCCTGCTCAGTGGAAACTGTACAGGAATGTGATGTTGGAGAATTATGACAATCTTGTGTTCCTGG
Seq C2 exon
GTCTTACTTCGTCTAAGCCATATCTGGTCACATGTCTGGAGCAAATACAAGAGCCTTCAGATGTGAAAAGAGGAGCAGCTACCTCTATGCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058093-'0-2,'0-1,4-2
Average complexity
S
Mappability confidence:
67%=50=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTAGTCCCGGGTCCTGT
R:
GGGAGCATAGAGGTAGCTGCT
Band lengths:
226-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: