MmuEX0002632 @ mm9
Exon Skipping
Gene
ENSMUSG00000091345 | AC119951.1
Description
collagen, type VI, alpha 5 [Source:MGI Symbol;Acc:MGI:3648134]
Coordinates
chr9:105814785-105817513:-
Coord C1 exon
chr9:105817469-105817513
Coord A exon
chr9:105817324-105817377
Coord C2 exon
chr9:105814785-105814847
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTATGTTTGTTTAGGGA
3' ss Score
9.39
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGGGAACATGGAGAGGACGGGCTGGACGGACTGGATGGAGAAGAA
Seq A exon
GGATTTTACGGATTTCGTGGGGGAAAGGGACAAAAAGGTGACCCTGGCAATCAG
Seq C2 exon
GGTTACCCAGGCATCAGAGGCGCTGCTGGGGAAGATGGCGAGAAGGGCTTCCCAGGGGATCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091345-'16-17,'16-16,17-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.9=100),PF0139113=Collagen=PU(10.2=60.0)
A:
PF0139113=Collagen=FE(23.0=100),PF0139113=Collagen=FE(19.3=100)
C2:
PF0139113=Collagen=PD(5.4=19.0),PF0139113=Collagen=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATGGAGAGGACGGGCT
R:
CCCCTGGGAAGCCCTTCTC
Band lengths:
100-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: