RnoEX6037301 @ rn6
Exon Skipping
Gene
ENSRNOG00000010663 | Col6a5
Description
collagen type VI alpha 5 chain [Source:RGD Symbol;Acc:1565804]
Coordinates
chr8:114583785-114585665:-
Coord C1 exon
chr8:114585621-114585665
Coord A exon
chr8:114585485-114585538
Coord C2 exon
chr8:114583785-114583847
Length
54 bp
Sequences
Splice sites
3' ss Seq
CATGTCTTATGTTTGTTTAGGGA
3' ss Score
9.13
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGAGAACACGGAGAGGACGGGCTTGACGGACTGGACGGGGAAGAA
Seq A exon
GGATTTTACGGACTTCGTGGGGGAAAAGGACAAAAAGGTGACCCTGGCTCTCAG
Seq C2 exon
GGCCACCCAGGTTCCAGAGGCGCTCCTGGGGAAGATGGCGAGAAGGGCTTCCCAGGGGATCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010663-'20-15,'20-14,21-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.2=100),PF0139113=Collagen=PU(12.8=73.3)
A:
PF0139113=Collagen=FE(23.3=100),PF0139113=Collagen=FE(19.8=100)
C2:
PF0139113=Collagen=PD(4.1=14.3),PF0139113=Collagen=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACACGGAGAGGACGGG
R:
CCCCTGGGAAGCCCTTCTC
Band lengths:
102-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]