MmuEX0002637 @ mm9
Exon Skipping
Gene
ENSMUSG00000091345 | AC119951.1
Description
collagen, type VI, alpha 5 [Source:MGI Symbol;Acc:MGI:3648134]
Coordinates
chr9:105758400-105765175:-
Coord C1 exon
chr9:105765079-105765175
Coord A exon
chr9:105764160-105764392
Coord C2 exon
chr9:105758400-105759667
Length
233 bp
Sequences
Splice sites
3' ss Seq
ACTTTCCTCCTTCATCCCAGACT
3' ss Score
7.45
5' ss Seq
AAGGTAGTC
5' ss Score
5.64
Exon sequences
Seq C1 exon
GTGCTATCAACAAATATCCCGGCAGAGACCTGCAAGCCAAGTGTGATAATCTCACCTTCCCTGGCCCAGAGAATGCTGGCACAGAAGACAGTGCATT
Seq A exon
ACTCATCCCCGAGGTGTACAGAATCGAGGCAGGAGAGAATGAGCTGTCTGGAGACTCTGGATCTCAGGAGCAGCATTTCTTCCTCCTAGGGAACAGTCATGGCAACCATTCAGAAAGCACTGCTGATCTGATGCGGCAGTTGTACCTGCTCCTCTCCTCCGGGGAACTGATGGTGAATGATAAGGAAGAGCCTTGTTCCGCAGAGACCCCAGCTCCAGTGAACAGCAAACAAG
Seq C2 exon
ATGGCGAAGATGCAAGATGAGCTTTCAGGAGAGAAGAGTGCTCGCTGGCAGATGGGACTCCCCTGCGGCAGTAGTTCCAGCCAGAAAATGCCAATCATTTATTAGAAGGGTCGGGGCAGGAACTAGAACTAAATTTGCTTCTCAGTCCCAAACCTGAGGGAGAGACTCTTCAGGATAGAGACATCAAGGAACAGACCTTCAAAACTAGGACCGGGTTTCATCTCTCAGGAGGAATGGGACCACTGAGCAAGAAGAGGCAACAGCCTTCCCCGTGACAGCTTGGTTCACTCGCTTTGATCACTTTGGTGAGTGCCTGCCAAAAGAAGATGTTTGTCATGATCGCCATCACATCTACATCTCAAATTAGACCCTTGAGTAAAAACAGTTTGTAATTGGAATGTCCCAATTGTCTTTTTTTTTTCTTCCCATTTATACAACCCTAAACTCTGTGTCGCTGGTTCCCATAGGACCCTGAGATTACATTTAGCACCCGTTACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091345-'40-40,'40-39,41-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.481 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATCTCACCTTCCCTGGCCC
R:
TCTTCTTGCTCAGTGGTCCCA
Band lengths:
306-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: