RnoEX6037317 @ rn6
Exon Skipping
Gene
ENSRNOG00000010663 | Col6a5
Description
collagen type VI alpha 5 chain [Source:RGD Symbol;Acc:1565804]
Coordinates
chr8:114530252-114532068:-
Coord C1 exon
chr8:114531972-114532068
Coord A exon
chr8:114531060-114531292
Coord C2 exon
chr8:114530252-114530268
Length
233 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTCCTTCACCCTAGACT
3' ss Score
9.67
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTGCTATCAACAAATATCCTAGCAGAGACCTGCAAGCCAAGTGTGCTAATCTCACTTTCCCTGGCCTGGAGAATGCTGGCACAGAAGACAGTATATT
Seq A exon
ACTCATCCCTGAGGTATATCAAATCGAGTCAGGAGAGAGTGAGCTGTCTGGATACTCCGGTTCTCAGGAGCAGCCTTTCTTCCTCCTAGGGAAGGGTAATGATAACGGGTCAGAAGGCACTGCTGATCTCATGCAGCACCTGTACCTGCTCTTCTCCTCTGGAGAACTCATGGTGAATGATGAAGAAGAGCCGTGTTCTGAAGAGACCTCAGCTCCAGCGAACGGCAAGCAAG
Seq C2 exon
GAGGAGGAGGAGGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010663-'49-45,'49-43,50-45=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.361 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]