Special

MmuEX0002962 @ mm9

Exon Skipping

Gene
ENSMUSG00000051900 | Abca16
Description
ATP-binding cassette, sub-family A (ABC1), member 16 [Source:MGI Symbol;Acc:MGI:2388711]
Coordinates
chr7:127580164-127596652:+
Coord C1 exon
chr7:127580164-127580281
Coord A exon
chr7:127582683-127582856
Coord C2 exon
chr7:127596471-127596652
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTGTAATTTCTTCTTTGAAGCTC
3' ss Score
7.22
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
ATTGTAGAGGAGCCAATCTTGCGCTACAGTGACTGTAGTTTCATCTTTGTCTTTCTTACATGTTATGCTATCGCATCCATATGCTTTGCCTTTATGGTTAGCACGTTCTTCAGTAAAA
Seq A exon
CTCGTTTGGCTGCTTCTGCTGGAAACCTCCTATTTTTTGCCAGTTTCTTTCCCTATAATTTCATCTCTGAATACTATGGGATGTTGAACCTTACTACCAAGATAACCGCCTGTCTGAGTGCAAATGTTGCTTTGGCACTGGGAATTAATATCTTAATCAAGTTGGAAATACAAG
Seq C2 exon
AGATTGGTGTTAAATGGCACAACCTTTGGACACCAGCCAATCTTGAGGATAACCTCAACTTTGGCTATATGCTTGGAATGCTTTTGTTTGATGCTTTCTTATACAGCCTTGTTACCTGGTATGTAGAAGCCGTCTTTCCTGGACAGTGTGGTGTGCCTCAACCATGGTACTTTTTCCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051900-'8-9,'8-7,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF126982=ABC2_membrane_3=FE(9.1=100)

							
A:
PF126982=ABC2_membrane_3=PD(18.2=82.8)

							
C2:
PF126982=ABC2_membrane_3=PD(9.3=65.6)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000112736





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000061094
          









    
Other Skipping Isoforms:
NA
  



Associated events






Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr16:2358451-2358624 
ALTERNATIVE
HsaEX0000263
(ABCA3)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr25:19684923-19685096 
BtaEX0001116
([1])
Chicken
(galGal4)
chr14:13582278-13582451 
HIGH PSI
GgaEX6013152
(ABCA3)
Chicken
(galGal3)
chr14:14347661-14347834 
HIGH PSI
GgaEX6013152
(E1BVQ5_CHICK)
Zebrafish
(danRer10)
chr3:12495046-12495219 
HIGH PSI
DreEX6015429
(abca3b)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GAGCCAATCTTGCGCTACAGT

				
R: 
CTGTCCAGGAAAGACGGCTTC

				
Band lengths: 
255-429

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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