BtaEX0001116 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N096]
Coordinates
chr25:19664645-19691330:+
Coord C1 exon
chr25:19664645-19664733
Coord A exon
chr25:19684923-19685096
Coord C2 exon
chr25:19691149-19691330
Length
174 bp
Sequences
Splice sites
3' ss Seq
AATTTCCTTCTCATTTGCAGCCC
3' ss Score
9.27
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TGACTATAGTTTCATTTTTGTCTTTCTTATGTGTTATGCCATTGCTTCAATATTCTTTGGCTTTATGGTTAGCACATTCTTCAATAAAG
Seq A exon
CCCGTTTGGCTGCTTCTGCTGGAAGCTTTATATATTTTGTCAGTTTCTTTCCATTTAATTCCATTGCTCAATACTATGGACGGATAAACCTTACCATGAAGGTAGCTGCCTGTCTCAGCCCAAATATTGCTTTGGCACTGGGGATTAAACTCCTTGTCAAGTTTGAAACAAAAC
Seq C2 exon
AAACTGGTGTGAACTGGAATAAGATTTGGACACCAGCCACCCTTGAGGATAACCTCACCTTTGGCCATATGATGGGAATGCTTGTAATTGATGCTTTCTTGTATGGCCTTGTGACCTGGTACATAGAAGCTGTCTTTCCAGGGCAATATGGCATGCCTCAACCATGGTACTTTTTTCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035915-'11-13,'11-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.6=100)
A:
PF126982=ABC2_membrane_3=FE(22.4=100)
C2:
PF126982=ABC2_membrane_3=PD(15.4=65.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTCTTATGTGTTATGCCATTGC
R:
AAGTACCATGGTTGAGGCATGC
Band lengths:
242-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development