GgaEX6013152 @ galGal4
Exon Skipping
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13581411-13583111:-
Coord C1 exon
chr14:13582991-13583111
Coord A exon
chr14:13582278-13582451
Coord C2 exon
chr14:13581411-13581592
Length
174 bp
Sequences
Splice sites
3' ss Seq
GCTCTTCTCTGTGCTCACAGCAA
3' ss Score
7.78
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGAGTGAACAAGGAGCTGTGCTCACCAGCAGTGACCCCACGCTGGTGTTCACCTTCCTCGCCATCTTCTCCATCTCCACCATCTCCTTCAACTTCATGGTGAGCACCTTCTTCTCCAGAG
Seq A exon
CAAACGTTGCAGCTGCTGCTGGAGGCTTCCTGTACTTCTTCTCCTACATTCCCTACTTCTTCATCTCGCCTCGCTACGACCTGATGTCCCACAGCCAGAAGCTGGCATCCTGCCTCATCTCCAACGTGGCCATGGCCATGGGAGCACAGCTCATAGGCATGTTTGAAGGAAAAG
Seq C2 exon
GGACTGGCATTCAATGGAGGGACCTCATGAAACCTGTCAGTGTGGACGACAACTTCACCTTGGCACAAGTCCTGGGGATGCTGCTCCTGGACTCGGTGCTCTATGGCCTGGTGGCCTGGTACGTGGAGGCTGTCTTCCCAGGAGAGTACGGCGTGCCGCAGCCCTGGTACTTCTTCCTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'10-15,'10-13,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(8.9=100)
A:
PF126982=ABC2_membrane_3=FE(13.0=100)
C2:
PF126982=ABC2_membrane_3=PD(8.9=65.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTTCCTCGCCATCTTCT
R:
AGGAAGAAGTACCAGGGCTGC
Band lengths:
250-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]