RnoEX6046402 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13749264-13754155:+
Coord C1 exon
chr10:13749264-13749384
Coord A exon
chr10:13750275-13750448
Coord C2 exon
chr10:13753974-13754155
Length
174 bp
Sequences
Splice sites
3' ss Seq
CGTGCTCTTTGTCCCCACAGCCA
3' ss Score
11.56
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGAAGAAGGACATAGCAGTCCTTTCCAACAGCGACCCCTCCCTGGTTCTGGCCTTCCTGCTGTGTTTTGCAATCTCCTCCATTTCCTTCAGCTTCATGGTCAGCACCTTCTTCAGTAAAG
Seq A exon
CCAACATGGCAGCAACCGTGGGCGGCTTCCTTTACTTCTTCACCTACACCCCTTACTTTTTCGTGGCTCCTCGGTACAACTGGATGACACTGAGTCAGAAGCTCTTGTCCTGCCTCCTATCTAATGTTGCCATGGCGATGGGAGCCCAGCTCATCGGAAAATTTGAAGCCAAAG
Seq C2 exon
GCACTGGCATCCAGTGGTGTGACCTCCTGAACCCTGTCAACGTAGATGATGATTTCTGCTTTGGACAAGTGCTGGGGATGCTGCTGCTGGATTCAGTACTCTATGGCCTGGTGACCTGGTACGTGGAGGCCGTCTTCCCAGGCCAGTTTGGCGTGCCCCAGCCCTGGTACTTCTTCCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(8.9=100)
A:
PF126982=ABC2_membrane_3=FE(12.9=100)
C2:
PF126982=ABC2_membrane_3=PD(8.9=65.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCTTTCCAACAGCGACC
R:
CCAAACTGGCCTGGGAAGAC
Band lengths:
256-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]