BtaEX6108001 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014903 | ABCA3
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 3 (ABCA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001113746]
Coordinates
chr25:1815878-1820030:-
Coord C1 exon
chr25:1819910-1820030
Coord A exon
chr25:1818078-1818251
Coord C2 exon
chr25:1815878-1816059
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCTCTCCATCCACAGCCA
3' ss Score
11.52
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGAAGAAGGACGTGGCGGTGCTGGCGCACAGCGACCCCACGCTGGTGCTGGTCTTCCTGGCCTGCTTTGCTGTCTCCTCCATCTCCTTCAGCTTCATGGTCAGCACCTTCTTCAGCAAAG
Seq A exon
CCAACATGGCAGCAGCCATTGGCGGCTTCCTCTACTTCTTCTCCTACATCCCCTACTTCTTCGTTGCTCCTCGGTACAACTGGATGACGCTGAGCCAGAAGCTCTTCTCCTGCCTCCTGTCCAATGTCGCCATGGCGATGGGAGCCCAGCTCATAGGGAAATTTGAAGCTAAAG
Seq C2 exon
GCACAGGCATCCAGTGGCGAGACCTCCTGAGTCCCGTCAATGTGGACGACGACTTCACCTTCGGGCAGGTGCTGGGCATGCTGCTGCTGGACTCCGTCCTCTACGGGCTTGTGGCCTGGTATGTGGAGGCCGTCCTCCCGGGCCAGTTCGGCGTGCCCCAGCCCTGGTACTTCTTCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014903-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(8.9=100)
A:
PF126982=ABC2_membrane_3=FE(13.0=100)
C2:
PF126982=ABC2_membrane_3=PD(8.9=65.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAGGACGTGGCGGTG
R:
CTCCACATACCAGGCCACAAG
Band lengths:
247-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]