MmuEX0002996 @ mm10
Exon Skipping
Gene
ENSMUSG00000018800 | Abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:MGI Symbol;Acc:MGI:2386607]
Coordinates
chr11:110301731-110304212:-
Coord C1 exon
chr11:110304093-110304212
Coord A exon
chr11:110302993-110303131
Coord C2 exon
chr11:110301731-110301821
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTATACCCCTATTCGCTCAGATA
3' ss Score
4.64
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
GTGCAGAAAGTGTTGCTGGATCTGGACATGCAAGCCATCAAAGATAATCAAGCGAAAAAGTTAAGCGGTGGTCAGAAAAGGAAGCTGTCTGTAGGAATTGCAGTTCTCGGGAATCCAAAG
Seq A exon
ATACTCCTGCTAGACGAGCCTACAGCAGGAATGGACCCCTGCTCTCGCCATATTGTTTGGAATCTTCTAAAGTATAGAAAGGCTAACAGAGTGACCGTGTTTAGTACTCACTTCATGGATGAGGCTGACATTCTTGCCG
Seq C2 exon
ACAGGAAAGCTGTCATATCACAAGGAATGCTGAAGTGTGTTGGTTCTTCAATTTTCCTAAAGAGTAAATGGGGAATCGGCTACCGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018800-'23-22,'23-19,24-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(26.5=100)
A:
PF0000522=ABC_tran=PD(5.4=17.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAAAGTGTTGCTGGATCT
R:
GGTAGCCGATTCCCCATTTACT
Band lengths:
203-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types