RnoEX6050354 @ rn6
Exon Skipping
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98609870-98612316:-
Coord C1 exon
chr10:98612197-98612316
Coord A exon
chr10:98611083-98611221
Coord C2 exon
chr10:98609870-98609960
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTTATCCCCGGCTCGCCCAGATC
3' ss Score
5.48
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
GTACAGAAAGTTTTACTGGATTTGGACATGCAAGCCATCAAAGATAATCAAGCGAAAAAACTAAGTGGTGGCCAAAAGAGAAAGCTGTCTTTAGGAATTGCAGTTCTTGGGAATCCAAAG
Seq A exon
ATCCTCCTGCTAGATGAGCCGACAGCAGGAATGGACCCCTGCTCTCGCCACATTGTTTGGAATCTTCTCAAGTACAGGAAGGCTAACCGAGTGACAGTCTTCAGCACTCACTTCATGGATGAGGCCGACATTCTTGCCG
Seq C2 exon
ACAGGAAAGCTGTCATATCACAAGGAATGCTGAAATGTGTTGGTTCTTCAATTTTCCTGAAAAGTAAATGGGGAATCGGCTACCGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378-'17-20,'17-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(26.5=100)
A:
PF0000522=ABC_tran=PD(5.4=17.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAAGTTTTACTGGATTTGGACA
R:
GGTAGCCGATTCCCCATTTACT
Band lengths:
202-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]