RnoEX6050353 @ rn6
Exon Skipping
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98611083-98613047:-
Coord C1 exon
chr10:98612872-98613047
Coord A exon
chr10:98612197-98612316
Coord C2 exon
chr10:98611083-98611221
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCACACTTTACTTTTACAGGTA
3' ss Score
10.56
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGTTTGCTTCTATATATGGACACAGAGTCTCTGAAATAGATGAAATGTTTGAAGCGAGGAAAATGATTGGCATATGTCCACAGTCAGATATGAACTTTGATGTTCTGACAGTAGAAGAAAATTTATCAATTTTGGCTTCAGTCAAAGGAATACCAGCCAACAACATAATTCAGGAA
Seq A exon
GTACAGAAAGTTTTACTGGATTTGGACATGCAAGCCATCAAAGATAATCAAGCGAAAAAACTAAGTGGTGGCCAAAAGAGAAAGCTGTCTTTAGGAATTGCAGTTCTTGGGAATCCAAAG
Seq C2 exon
ATCCTCCTGCTAGATGAGCCGACAGCAGGAATGGACCCCTGCTCTCGCCACATTGTTTGGAATCTTCTCAAGTACAGGAAGGCTAACCGAGTGACAGTCTTCAGCACTCACTTCATGGATGAGGCCGACATTCTTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378-'16-19,'16-18,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(39.5=100)
A:
PF0000522=ABC_tran=FE(26.5=100)
C2:
PF0000522=ABC_tran=PD(5.4=17.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCGAGGAAAATGATTGGCA
R:
GTCGGCCTCATCCATGAAGTG
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]