MmuEX0002995 @ mm9
Exon Skipping
Gene
ENSMUSG00000018800 | Abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:MGI Symbol;Acc:MGI:2386607]
Coordinates
chr11:110164307-110166339:-
Coord C1 exon
chr11:110166164-110166339
Coord A exon
chr11:110165407-110165526
Coord C2 exon
chr11:110164307-110164445
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCCCACTGTACCTTTACAGGTG
3' ss Score
10.96
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GGTTTGCTTCTATATATGGACACAGAGTCTCTGAAATAGATGAAATGTTTGAAGCAAGAAAAATGATTGGCATATGTCCGCAGTCAGATATAAACTTTGATGTTCTGACAGTAGAAGAAAATTTATCAATTTTGGCTTCAATCAAAGGAATACCAGCCAACAATATAATTCAAGAA
Seq A exon
GTGCAGAAAGTGTTGCTGGATCTGGACATGCAAGCCATCAAAGATAATCAAGCGAAAAAGTTAAGCGGTGGTCAGAAAAGGAAGCTGTCTGTAGGAATTGCAGTTCTCGGGAATCCAAAG
Seq C2 exon
ATACTCCTGCTAGACGAGCCTACAGCAGGAATGGACCCCTGCTCTCGCCATATTGTTTGGAATCTTCTAAAGTATAGAAAGGCTAACAGAGTGACCGTGTTTAGTACTCACTTCATGGATGAGGCTGACATTCTTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018800-'17-14,'17-13,18-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(39.5=100)
A:
PF0000522=ABC_tran=FE(26.5=100)
C2:
PF0000522=ABC_tran=PD(5.4=17.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCATATGTCCGCAGTCAG
R:
CGGCAAGAATGTCAGCCTCAT
Band lengths:
249-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: